View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1418_low_12 (Length: 278)
Name: NF1418_low_12
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 56277390 - 56277641
Alignment:
| Q |
18 |
caaagatcaactcaaaaacactaatcttgttttaaatgcttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacatt |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56277390 |
caaagatcaactcaaaaacacaaatcttgttttaaatggttttattgttcaagataggtacatgttctgcaaacacgatgttaaaaccattagttacatt |
56277489 |
T |
|
| Q |
118 |
cctgtccaacccaaaaac---gctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgtgcttttgtcatcttgtaaaggaa |
214 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||||| |
|
|
| T |
56277490 |
cctgtggaacccaaaaacaacgctgctaaactagttgttcaccacaatgttttttcttttcttcctcaagatgttgttgttttggcttcctgtaaaggaa |
56277589 |
T |
|
| Q |
215 |
ttctttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
266 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56277590 |
ttgtttgctgccgtacctgttttccttccccaaatccaaccatctatctctg |
56277641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University