View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1418_low_14 (Length: 267)
Name: NF1418_low_14
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 40775318 - 40775080
Alignment:
| Q |
15 |
ataaacttcccacctacttacaagtatgaagttaactcagataaatatgtgggtgaggacacacaagaaggggnnnnnnngagatctccagcatggtaag |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40775318 |
ataaacttcccacctacttacaagtatgaagttaactcagataaatatgtgggtgaggacacacaagaaggggaaaaaaagagatctccagcatggtaag |
40775219 |
T |
|
| Q |
115 |
tactagcatgtgaatatgttttgttattgcgtgaattagacactataattatttgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaa |
214 |
Q |
| |
|
| | ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40775218 |
tgcaagcatgtgaat--gttttgttattgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaa |
40775121 |
T |
|
| Q |
215 |
taaagcaacttaagtatcaaagtgcagaaaatcagctttca |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40775120 |
taaagcaacttaagtatcaaagtgcagaaaatcagctttca |
40775080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 40768686 - 40768448
Alignment:
| Q |
15 |
ataaacttcccacctacttacaagtatgaagttaactcagataaatatgtgggtgaggacacacaagaaggggnnnnnnngagatctccagcatggtaag |
114 |
Q |
| |
|
|||||||||||||| || ||||| |||||| ||||||| |||||| ||||||||| | ||||||||||||| | |||| ||||||||||||||| |
|
|
| T |
40768686 |
ataaacttcccacccacatacaaatatgaatttaactctgataaacatgtgggtgggaacacacaagaaggtgaaaaaaggagagctccagcatggtaag |
40768587 |
T |
|
| Q |
115 |
tactagcatgtgaatatgttttgttattgcgtgaattagacactataattatttgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaa |
214 |
Q |
| |
|
| | ||||||||||| | |||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40768586 |
tgcaagcatgtgaattt--tttgttgttgcatgaattagacactataattatgcgtaagattatgcaggtgtgatcgcatattgtggcttggaaaaggaa |
40768489 |
T |
|
| Q |
215 |
taaagcaacttaagtatcaaagtgcagaaaatcagctttca |
255 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
40768488 |
taaagcaactaaagtatcagagtgcagaaaatcagctttca |
40768448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 244
Target Start/End: Original strand, 4679898 - 4679965
Alignment:
| Q |
177 |
atgcaggtgtgatcgcatattgtggcttggaaaaggaataaagcaacttaagtatcaaagtgcagaaa |
244 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||| || ||| || ||||||||| |
|
|
| T |
4679898 |
atgcaggtgtgatcgaatattgtggctaggaaaaggaataaagcaactaaattatgaacgtgcagaaa |
4679965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University