View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_low_16 (Length: 249)
Name: NF1418_low_16
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_16 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 32868800 - 32869040
Alignment:
| Q |
9 |
gaacaatatgaggcaaagttagaacaataatctttgtgttgcatcaaatgcactgcactagtttaaaaaatttaaaaatttggatcttcggtgtgacact |
108 |
Q |
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| T |
32868800 |
gaacaatatgaggcaaagttagaacaataatctttgtgttgcatcaaatgcactgcactagtttaaaaaatttaaaaatttggatcttcggtgtgacact |
32868899 |
T |
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| Q |
109 |
tgccacaccaagaccttaacaggtccgcccagcatgtcgataactctttcttatattacaaaagtttatattatcatggcattctttcattgtcgtttta |
208 |
Q |
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| T |
32868900 |
taccacaccaagaccttaacaggtccgcccagcatgtcgataactctttcttatattacaaaagtttatattatcatagcattctttcattgtcgtttta |
32868999 |
T |
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| Q |
209 |
catcgtgatctttatacccttattttttgcatggacaactt |
249 |
Q |
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| T |
32869000 |
catcgtgatctttatacccttattttttgcatggacaactt |
32869040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 17109261 - 17109312
Alignment:
| Q |
9 |
gaacaatatgaggcaaagttagaacaataatctttgtgttgcatcaaatgca |
60 |
Q |
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| T |
17109261 |
gaacaacatgaggcaaaggtagaacaatcctctttgtgctgcatcaaatgca |
17109312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 18114216 - 18114152
Alignment:
| Q |
10 |
aacaatatgaggcaaagttagaacaataatctttgtgttgcatcaaatgcactgcactagtttaa |
74 |
Q |
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| T |
18114216 |
aacaatatgaggcaaaggtagaacaatactctttgtgttgcatcaaatgcactacactagtttaa |
18114152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 4136965 - 4136925
Alignment:
| Q |
98 |
ggtgtgacacttgccacaccaagaccttaacaggtccgccc |
138 |
Q |
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| T |
4136965 |
ggtgtgacacttgccacaccaggaccttaacaggtccgccc |
4136925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 15129 - 15177
Alignment:
| Q |
8 |
cgaacaatatgaggcaaagttagaacaataatctttgtgttgcatcaaa |
56 |
Q |
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| T |
15129 |
cgaacaacatgaggcaaaggtagaacaattctctttgtgctgcatcaaa |
15177 |
T |
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