View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_low_17 (Length: 248)
Name: NF1418_low_17
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 2246384 - 2246154
Alignment:
| Q |
18 |
agataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaagatggcattcttgctaag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246384 |
agataatgcaaggaaaacgttataattttgttattattttccctaaacagcaagaacttcccaaatcaattcaggatcaaaagatggcattcttgctaag |
2246285 |
T |
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| Q |
118 |
gagcaatcttcaaactctgtttcctctgtcaccattgtcgaaaccgaattcggagaattctcccctttccaaattccatcctcagaaacagttggtgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2246284 |
gagcaatcttcaaactctgtttcctctgtcaccattgtcgaaaccgaattcggagaattctcccctttccaaattccatcctcagaaacagttggtgaaa |
2246185 |
T |
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| Q |
218 |
acaattcattcacccaatcatcacaaaaaac |
248 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2246184 |
acaattcattcacccaatcatcacaaaaaac |
2246154 |
T |
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