View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_low_22 (Length: 238)
Name: NF1418_low_22
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 32869366 - 32869144
Alignment:
| Q |
17 |
atactatagtatagtagtgactcttaatctcttatagagattattacttaggcatatg-tgctttgagtgttgatatctagtgaaaagtaattcattgta |
115 |
Q |
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| T |
32869366 |
atactatagtatagtagtgactcttaatctcttatagagattattacttaggcatatggtgctttgagtgttgatatctagtgaaaagtaattcattgta |
32869267 |
T |
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| Q |
116 |
ttgctactcagttttaaactgaattatatcatgtgaagtattggtatacccgtcaaaaaataagttgtccatgccaaat-gttggttttgtgtctatagt |
214 |
Q |
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| T |
32869266 |
ttgctactcagttttaaactgaattatatcatgtgaagtattggtatacccgtcaaaaaataagttgt-catgccaaatggttggttttgtgtctatagt |
32869168 |
T |
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| Q |
215 |
ttgaatgcaatggtataaagaaac |
238 |
Q |
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|||||||||||||||||||||||| |
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| T |
32869167 |
ttgaatgcaatggtataaagaaac |
32869144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 26650423 - 26650305
Alignment:
| Q |
16 |
catactatagtatagtagtgactcttaatctcttatagagattattacttaggcatatgtgctttgagtgttgatatctagtgaaaagtaattcattgta |
115 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26650423 |
catactatagtatagtagtgactcttaatc----------atcattacttaggtatatgtgctttgagtgttgatatctagtgaaaggtaattcattgta |
26650334 |
T |
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| Q |
116 |
ttgctactcagttttaaactgaattatat |
144 |
Q |
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| T |
26650333 |
ttgctactgagttttaaactgaattatat |
26650305 |
T |
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