View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1418_low_6 (Length: 395)

Name: NF1418_low_6
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1418_low_6
NF1418_low_6
[»] chr4 (3 HSPs)
chr4 (10-373)||(14353246-14353612)
chr4 (127-171)||(18463344-18463388)
chr4 (119-164)||(14477941-14477986)
[»] scaffold0125 (2 HSPs)
scaffold0125 (10-171)||(17760-17923)
scaffold0125 (10-164)||(6903-7038)
[»] chr2 (6 HSPs)
chr2 (10-165)||(30212030-30212187)
chr2 (90-171)||(20005635-20005716)
chr2 (90-171)||(36734093-36734174)
chr2 (90-158)||(28344656-28344724)
chr2 (90-171)||(23801718-23801799)
chr2 (90-158)||(45536232-45536300)
[»] chr1 (3 HSPs)
chr1 (10-161)||(20707719-20707872)
chr1 (90-164)||(34393123-34393197)
chr1 (130-174)||(1643434-1643478)
[»] chr8 (5 HSPs)
chr8 (10-164)||(22707981-22708137)
chr8 (101-164)||(21678486-21678548)
chr8 (98-164)||(23884492-23884558)
chr8 (101-164)||(21676140-21676202)
chr8 (90-164)||(20516651-20516725)
[»] chr6 (5 HSPs)
chr6 (10-171)||(3006524-3006687)
chr6 (98-172)||(31166557-31166631)
chr6 (91-164)||(18459588-18459661)
chr6 (90-158)||(1816849-1816917)
chr6 (100-164)||(1819321-1819385)
[»] scaffold1434 (1 HSPs)
scaffold1434 (10-164)||(1016-1172)
[»] chr3 (6 HSPs)
chr3 (10-164)||(6003424-6003579)
chr3 (90-158)||(3526825-3526893)
chr3 (90-154)||(48631644-48631708)
chr3 (100-158)||(25202478-25202536)
chr3 (90-164)||(48043122-48043195)
chr3 (98-158)||(12917044-12917104)
[»] chr7 (5 HSPs)
chr7 (10-171)||(21661495-21661658)
chr7 (90-164)||(33060747-33060821)
chr7 (90-158)||(42565129-42565197)
chr7 (90-164)||(38300106-38300180)
chr7 (98-164)||(33555736-33555802)
[»] scaffold1102 (1 HSPs)
scaffold1102 (90-164)||(1622-1696)
[»] scaffold0048 (1 HSPs)
scaffold0048 (90-164)||(68400-68473)
[»] chr5 (2 HSPs)
chr5 (90-164)||(19227366-19227440)
chr5 (15-164)||(21404326-21404466)
[»] scaffold0205 (1 HSPs)
scaffold0205 (90-146)||(5311-5367)
[»] scaffold1939 (1 HSPs)
scaffold1939 (90-164)||(484-559)
[»] scaffold0217 (1 HSPs)
scaffold0217 (98-164)||(29020-29086)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 14353612 - 14353246
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  14353612 attattctattttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaaaacatcacacatcgcaattattca 14353513  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaa-taactaaataataaattagggttttacacctagcatctacatctaagtatggagggaaaatag 206  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14353512 cataaattgttcaaaatgacactaaactcgataaaaataactaaataataaattagggttttacacctagcatctacatctaagtatggagggaaaatag 14353413  T
Q  207 cagtttctccatcaggatgtagggcttgaataagcttaacaacgaaatcatcaaattcttttcctttcaagttgtcagactctggttgaggtttggtgga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14353412 cagtttctccatcaggatgtagggcttgaataagcttaacaacgaaatcatcaaattcttttcctttcaagttgtcagactctggttgaggtttggtgga 14353313  T
Q  307 tggtgatggaggtaaagctttatctagatttttgtagacacttcttaaggcatgtcatctagattgg 373  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14353312 tggtgatgggggtaaagctttatctagatttttgtagacacttcttaaggcatgtcatctagattgg 14353246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 171
Target Start/End: Original strand, 18463344 - 18463388
Alignment:
Q  127 cactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    |||||||||||||||||||| ||||||||||| |||||| |||||    
T  18463344 cactaaactcgataaaataaataaataataaaatagggtgttaca 18463388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 14477941 - 14477986
Alignment:
Q  119 caaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||| ||||||||| |||||||||||| ||||||||||| |||||    
T  14477941 caaaaagacactaaattcgataaaataaataaataataaaataggg 14477986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 17923 - 17760
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  17923 attattctattttaattttattccttcactaataatactataataagctactaatattcaacaacacataacacaaaacatcacacatcgcaattattca 17824  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17823 cataaattattccaaatgacactaaactcgataaaataactaaataataaattagggtgttaca 17760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 7038 - 6903
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaacatcacacatcgcaattattcaca 109  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                   |||||||||||    
T  7038 attattctattttaattttattccttcactaataatactataataagctactaatattcaccaacacata-------------------aattattcaca 6958  T
Q  110 taaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6957 taaattattcaaaatgacactaaactcgataaaataactaaataataaattaggg 6903  T

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Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 30212187 - 30212030
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||    
T  30212187 attattctattttaattttattcattcactaataatactataataagctactaatattcaccaacacataacacaaaacatcagacatcgcaattattca 30212088  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggt 165  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30212087 cataaattattcaaaatgacactaaactcgataaaataactaaataataaataagggt 30212030  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 20005716 - 20005635
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||| |||||    
T  20005716 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaaatagggtgttaca 20005635  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 36734174 - 36734093
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||| |||||    
T  36734174 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaaatagggtgttaca 36734093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 28344724 - 28344656
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  28344724 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 28344656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 23801718 - 23801799
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    ||||||| |||||||||| ||| ||| | ||||| |||||||||||| ||||||||| ||||||||||| |||||| |||||    
T  23801718 acacatcacaattattcaaatacattatacaaaaagacactaaactcaataaaataaataaataataaaatagggtgttaca 23801799  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 45536232 - 45536300
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    ||||||| |||||| ||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  45536232 acacatcacaattaatcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 45536300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 20707872 - 20707719
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  20707872 attattctattttaattttattccttcactaataatactataataagctactaatattcaccaacacataacacaaaacatcacacatcgcaattattca 20707773  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaatta 161  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  20707772 cataaattattcaaaatgacactaaactcgataaaataaataaataataaatta 20707719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 34393123 - 34393197
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | |||||  ||| ||||||| ||||||||| ||||||||||| |||||    
T  34393123 acacatcacaattattcaaataaattatacaaaaaaacattaaactcaataaaataaataaataataaaataggg 34393197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 1643434 - 1643478
Alignment:
Q  130 taaactcgataaaataactaaataataaattagggttttacacct 174  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||||    
T  1643434 taaactcaataaaataaataaataataaaatagggtgttacacct 1643478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 22708137 - 22707981
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  22708137 attattctattttaattttattccttcactaataatactataataagctactaatattcaccaacatataacacaaaacatcacacatcgcaattattca 22708038  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  22708037 cataaattattcaaaatgacaataaactcgataaaataactaaataataaattaggg 22707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 21678548 - 21678486
Alignment:
Q  101 ttattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  21678548 ttattcaaataaattatacaaaaagacactaaactcgataaaataa-taaataataaaataggg 21678486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 23884492 - 23884558
Alignment:
Q  98 caattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||||| ||||||| |  |||| ||||||||||| |||||||||| ||||||||||| |||||    
T  23884492 caattattcaaataaattatataaaaagacactaaactagataaaataattaaataataaaataggg 23884558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 21676202 - 21676140
Alignment:
Q  101 ttattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| ||||||| | ||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  21676202 ttattcatataaattatacaaaaagacactaaacttgataaaataa-taaataataaaataggg 21676140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 20516725 - 20516651
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| | |||||||| ||||||| |   ||| || ||||||||||||||||||| ||||||||||| |||||    
T  20516725 acacatccccattattcaaataaattatattaaaagatactaaactcgataaaataaataaataataaaataggg 20516651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 10 - 171
Target Start/End: Complemental strand, 3006687 - 3006524
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    |||||| || ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  3006687 attattatattttaattgtattccttcactaataatactataataagctactaatattcaccaacacataacacaaaacatcacacatcgcaattattca 3006588  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  3006587 cataaattattcaaaatgacactaaactccataaaataactaaataataaattagggtgttaca 3006524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 31166557 - 31166631
Alignment:
Q  98 caattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttacac 172  Q
    ||||||||||  |||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||| ||||||    
T  31166557 caattattcaattaaattatacaaaaagacactaaactcgataaaataaataaataataaaatagggtgttacac 31166631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Original strand, 18459588 - 18459661
Alignment:
Q  91 cacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||| |||||||||| ||||||| | ||||| |||||||||||||||||| ||| ||||||||||| |||||    
T  18459588 cacatcacaattattcaaataaattatacaaaaagacactaaactcgataaagtaaataaataataaaataggg 18459661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 1816849 - 1816917
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    ||||||| | |||||| | ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  1816849 acacatccccattattaaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 1816917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 1819321 - 1819385
Alignment:
Q  100 attattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||| ||||||| | ||||| ||||||||||| ||||||| || ||||||||||| |||||    
T  1819321 attattcaaataaattatacaaaaagacactaaacttgataaaacaaataaataataaaataggg 1819385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1434 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold1434
Description:

Target: scaffold1434; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 1172 - 1016
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  1172 attattctattttaattttattccttcactaataattctataataagcaactaatattcaccaacacataacacaaaacatcacacatcgcaattattca 1073  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1072 cataaattattcaaaatgacactaaactcgataaaataactaaacaataaattaggg 1016  T

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Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 164
Target Start/End: Original strand, 6003424 - 6003579
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  6003424 attattcta-tttaattttattccttcactaatattactataataagctactaatattcaccaacatataacacaaaacatcacacatcgtaattattca 6003522  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003523 cataaattattcaaaatgacactaaactcgataaaataactaaataataaattaggg 6003579  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 3526893 - 3526825
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  3526893 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 3526825  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 48631644 - 48631708
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataa 154  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||    
T  48631644 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataattaaataa 48631708  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 25202478 - 25202536
Alignment:
Q  100 attattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    |||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  25202478 attattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 25202536  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 48043195 - 48043122
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| | |||||||| |||||||   ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  48043195 acacatccccattattcaaataaattaaacaaaaagacactaaactcgataaaataa-taaataataaaataggg 48043122  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 12917104 - 12917044
Alignment:
Q  98 caattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    |||||||||| ||||||| |   ||| | |||||||||||||||||||| |||||||||||    
T  12917104 caattattcaaataaattatattaaaaggcactaaactcgataaaataaataaataataaa 12917044  T

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Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 21661495 - 21661658
Alignment:
Q  10 attattctagtttaattttattctttcactaataatactataataagctactaatattcaccaacacataacacaa--catcacacatcgcaattattca 107  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||  |||| | |||| | ||||||||    
T  21661495 attattctattttaattttattccttcactaataatactataataagctactaacattcactaacacataacacaaaacatcgcgcatcaccattattca 21661594  T
Q  108 cataaattgttcaaaatgacactaaactcgataaaataactaaataataaattagggttttaca 171  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21661595 cataaattattcaaaatgacactaaactcgataaaataactaaataataaattagggtgttaca 21661658  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 33060747 - 33060821
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  33060747 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaaataggg 33060821  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 42565197 - 42565129
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaa 158  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| |||||||||||    
T  42565197 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataaataaataataaa 42565129  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 38300106 - 38300180
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||| ||||||||| ||||||||||| |||||    
T  38300106 acacatcacaattattcaaataaattatacaaaaagacactaaactcaataaaataaataaataataaaataggg 38300180  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 33555802 - 33555736
Alignment:
Q  98 caattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||||| ||||||| |   ||| |||||||||||||||||||||| ||||||||||| |||||    
T  33555802 caattattcaaataaattatattaaaagacactaaactcgataaaataaataaataataaaataggg 33555736  T

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Target: scaffold1102 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 1696 - 1622
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||| ||| |||||    
T  1696 acacatcacaattattcaaataaattatgcaaaaagacactaaactcgataaaataaataaataacaaaataggg 1622  T

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Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 68473 - 68400
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||||||||||||||||| ||||||||||| |||||    
T  68473 acacatcacaattattcaaataaattatacaaaa-gacactaaactcgataaaataaataaataataaaataggg 68400  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 164
Target Start/End: Complemental strand, 19227440 - 19227366
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | ||||| || ||||||||||||||||||| ||||||||||| |||||    
T  19227440 acacatcacaattattcaaataaattatacaaaaagaaactaaactcgataaaataaataaataataaaataggg 19227366  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 21404326 - 21404466
Alignment:
Q  15 tctagtttaattttattctttcactaataatact-ataataagctactaatattcaccaacacataacacaacatcacacatcgcaattattcacataaa 113  Q
    |||| ||||||| |||||  ||||||||||| || ||| ||||||||||||| | ||||||| |||||||| |||          |||||||||||||||    
T  21404326 tctaatttaattatattccgtcactaataatgctcatattaagctactaataattaccaacatataacacatcat----------aattattcacataaa 21404415  T
Q  114 ttgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    || | | ||| ||||||||||| |||||||||| ||||||||||| |||||    
T  21404416 ttatgccaaaagacactaaacttgataaaataaataaataataaaataggg 21404466  T

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Target: scaffold0205 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 5367 - 5311
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaatgacactaaactcgataaaataa 146  Q
    ||||||| |||||||||| ||||||| | ||||| ||||||||||||||||||||||    
T  5367 acacatcacaattattcaaataaattatacaaaaagacactaaactcgataaaataa 5311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1939 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1939
Description:

Target: scaffold1939; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 164
Target Start/End: Original strand, 484 - 559
Alignment:
Q  90 acacatcgcaattattcacataaattgttcaaaat-gacactaaactcgataaaataactaaataataaattaggg 164  Q
    ||||||| |||||||||| ||||||| | |||||  |||||||||||||||||||||  ||||||||||| |||||    
T  484 acacatcacaattattcaaataaattatacaaaaaagacactaaactcgataaaatatttaaataataaaataggg 559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 29020 - 29086
Alignment:
Q  98 caattattcacataaattgttcaaaatgacactaaactcgataaaataactaaataataaattaggg 164  Q
    |||||||||| ||||||| | ||||| |||||||||||  ||||||||| ||||||||||| |||||    
T  29020 caattattcaaataaattatacaaaaagacactaaacttaataaaataaataaataataaaataggg 29086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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