View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1418_low_9 (Length: 360)
Name: NF1418_low_9
Description: NF1418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1418_low_9 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 24 - 360
Target Start/End: Original strand, 41442886 - 41443222
Alignment:
| Q |
24 |
tatctcgctaacaaacgtaaggttttcagtgtgttagacagtcggctcgaaggacagtattcatcagatgagtcctacagggtagccacacttgctttgc |
123 |
Q |
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| T |
41442886 |
tatctcgctaacaaacgtaaggttttcagtgtgttagacagtcggctcgaaggacagtattcatcagatgagtcctacagggtagccacacttgctttgc |
41442985 |
T |
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| Q |
124 |
gatgcctatcaacagaatccaggtacaggcccaacatggatgaagttgttagaattttggagcagctcaaggttcctgatgtgaatgtaaatcgtaagcg |
223 |
Q |
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| T |
41442986 |
gatgcctatcaacagaatccaggtacaggcccaacatggatgaagttgttagaattttggagcagctcaaggttcctgatgtgaatgtaaatcgtaagcg |
41443085 |
T |
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| Q |
224 |
tgcgcggagaaaaagtgctgatgatgttacccgtgtgaggactcacaaatcttgtgctagtgccaagactcacacatcttatccacgtatcacgttgtct |
323 |
Q |
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| T |
41443086 |
tgcgcggagaaaaagtgctgatgatgttacccgtgtgaggactcacaaatcttgtgctagtgccaagactcacacatcttatccacgtatcacgttatct |
41443185 |
T |
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| Q |
324 |
cctctctatacttgaaattgaagatacgcaaaacctt |
360 |
Q |
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| T |
41443186 |
cctctctatacttgaaattgaagatacgcaaaacctt |
41443222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 41449331 - 41449494
Alignment:
| Q |
22 |
catatctcgctaacaaacgtaaggttttcagtgtgttagacagtcggctcgaaggacagtattcatcagatgagtcctacagggtagccacacttgcttt |
121 |
Q |
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| T |
41449331 |
catatctctctaataagcgcaaggttttcagggtgtttgacagtcggctggaagggcagtattcagcagaggaggcctacaaagttgctgcccttactat |
41449430 |
T |
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| Q |
122 |
gcgatgcctatcaacagaatccaggtacaggcccaacatggatgaagttgttagaattttggagcag |
188 |
Q |
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| T |
41449431 |
gaaatgcctgt---cagaatccaagtgcaggcctaatatggatgaagttgttagaactttggagcag |
41449494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 41459785 - 41459938
Alignment:
| Q |
34 |
acaaacgtaaggttttcagtgtgttagacagtcggctcgaaggacagtattcatcagatgagtcctacagggtagccacacttgctttgcgatgcctatc |
133 |
Q |
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| T |
41459785 |
acaaacgcaaggttttgagggtgttagacagtcggcttgaagggcagtgttcatcggttgaagcctataaggtaacctccctttctttgaaatgcctatc |
41459884 |
T |
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| Q |
134 |
aacagaatccaggtacaggcccaacatggatgaagttgttagaattttggagcagct |
190 |
Q |
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| T |
41459885 |
agaaaaatcc---tccaggcctaacatggatgaagttgttagcactttggagcagct |
41459938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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