View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_high_13 (Length: 334)

Name: NF14191_high_13
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_high_13
NF14191_high_13
[»] chr5 (5 HSPs)
chr5 (17-324)||(2836422-2836726)
chr5 (287-324)||(43490802-43490839)
chr5 (281-324)||(37214769-37214812)
chr5 (289-324)||(32837094-32837129)
chr5 (287-324)||(22938009-22938046)
[»] chr6 (1 HSPs)
chr6 (287-324)||(9953045-9953082)
[»] scaffold1993 (1 HSPs)
scaffold1993 (290-324)||(1057-1091)
[»] chr8 (3 HSPs)
chr8 (290-324)||(5981174-5981208)
chr8 (289-324)||(5540949-5540984)
chr8 (291-324)||(14420877-14420910)
[»] chr3 (4 HSPs)
chr3 (290-324)||(31548563-31548597)
chr3 (287-324)||(16185610-16185647)
chr3 (290-324)||(19302318-19302352)
chr3 (287-324)||(35411685-35411723)
[»] scaffold0015 (1 HSPs)
scaffold0015 (287-324)||(197251-197288)
[»] scaffold0005 (1 HSPs)
scaffold0005 (287-324)||(246304-246341)
[»] chr4 (2 HSPs)
chr4 (287-324)||(14571035-14571072)
chr4 (288-324)||(5680479-5680515)
[»] chr7 (1 HSPs)
chr7 (287-324)||(8276021-8276058)
[»] chr1 (1 HSPs)
chr1 (287-324)||(29644262-29644299)


Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 324
Target Start/End: Original strand, 2836422 - 2836726
Alignment:
Q  17 atatagaagccatcaaaccacatgttatttgggacctcgagtgtatgtcttttcttgacaaagtacaattccatgtgtgtgcagtttttagcccagcttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2836422 atatagaagccatcaaaccacatgttatttgggacctcgagtgtatgtcttttcttgacaaagtacaattccatgtgtgtgcagtttttagcccagcttt 2836521  T
Q  117 tgtttcaccaacaacagaattattattgtattttcgatatacacgacatgttatgagcttcatttgagtagatgaagaaaatttgacgttatatatatan 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  2836522 tgtttcaccaacaacagaattattattgtattttcgatatacacgacatgttatgagcttcatttgagtagatgaagaaaatttgacgttatatatat-- 2836619  T
Q  217 nnnnnnngaacgttatactatctctcatacctaagtttatgtataaattacttttgatggatgttaacactctgtcatttcacatttttagagtcttttt 316  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  2836620 -ttttttgaacgttatactatctctcatacctaagtttatgtataaattacttttggtggatgttaacactccgttatttcacatttttagagtcttttt 2836718  T
Q  317 atgatatt 324  Q
    ||||||||    
T  2836719 atgatatt 2836726  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 43490802 - 43490839
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43490802 tctgtcatttcacatttttagagtctttttatgatatt 43490839  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 37214769 - 37214812
Alignment:
Q  281 taacactctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||    
T  37214769 taacagtctgtcattccacatttttagagtctttttatgatatt 37214812  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 32837094 - 32837129
Alignment:
Q  289 tgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||| ||||||||||||||||||||||||||||    
T  32837094 tgtcattccacatttttagagtctttttatgatatt 32837129  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 22938046 - 22938009
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  22938046 tctgtcattccacgtttttagagtctttttatgatatt 22938009  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 9953045 - 9953082
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9953045 tctgtcatttcacatttttagagtctttttatgatatt 9953082  T

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Target: scaffold1993 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 1057 - 1091
Alignment:
Q  290 gtcatttcacatttttagagtctttttatgatatt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  1057 gtcatttcacatttttagagtctttttatgatatt 1091  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 5981208 - 5981174
Alignment:
Q  290 gtcatttcacatttttagagtctttttatgatatt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  5981208 gtcatttcacatttttagagtctttttatgatatt 5981174  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 289 - 324
Target Start/End: Complemental strand, 5540984 - 5540949
Alignment:
Q  289 tgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||| ||||||||||||||||||||||||||||    
T  5540984 tgtcattccacatttttagagtctttttatgatatt 5540949  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Original strand, 14420877 - 14420910
Alignment:
Q  291 tcatttcacatttttagagtctttttatgatatt 324  Q
    ||||| ||||||||||||||||||||||||||||    
T  14420877 tcattccacatttttagagtctttttatgatatt 14420910  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 31548563 - 31548597
Alignment:
Q  290 gtcatttcacatttttagagtctttttatgatatt 324  Q
    |||||||||||||||||||||||||||||||||||    
T  31548563 gtcatttcacatttttagagtctttttatgatatt 31548597  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 16185647 - 16185610
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16185647 tctgtcattccacatttttagagtctttttatgatatt 16185610  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Complemental strand, 19302352 - 19302318
Alignment:
Q  290 gtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| |||||||||||||||||||||||||    
T  19302352 gtcatttcatatttttagagtctttttatgatatt 19302318  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 35411685 - 35411723
Alignment:
Q  287 tctgtcatttca-catttttagagtctttttatgatatt 324  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  35411685 tctgtcatttcaacatttttagagtctttttatgatatt 35411723  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 197251 - 197288
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  197251 tctgtcattccacatttttagagtctttttatgatatt 197288  T

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Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 246341 - 246304
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  246341 tctgtcattccacatttttagagtctttttatgatatt 246304  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 14571035 - 14571072
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  14571035 tctgtcattccacatttttagagtctttttatgatatt 14571072  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 5680479 - 5680515
Alignment:
Q  288 ctgtcatttcacatttttagagtctttttatgatatt 324  Q
    |||||||| ||||||||||||||||||||||||||||    
T  5680479 ctgtcattccacatttttagagtctttttatgatatt 5680515  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 8276021 - 8276058
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| || |||||||||||||||||||||||||    
T  8276021 tctgtcattccatatttttagagtctttttatgatatt 8276058  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 29644299 - 29644262
Alignment:
Q  287 tctgtcatttcacatttttagagtctttttatgatatt 324  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  29644299 tctgtcattccacatttatagagtctttttatgatatt 29644262  T

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