View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_high_2 (Length: 492)

Name: NF14191_high_2
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_high_2
NF14191_high_2
[»] chr3 (3 HSPs)
chr3 (389-479)||(5373421-5373512)
chr3 (53-152)||(5373732-5373830)
chr3 (310-362)||(5373539-5373590)
[»] chr1 (2 HSPs)
chr1 (53-149)||(10310642-10310738)
chr1 (57-149)||(30717984-30718076)
[»] chr7 (1 HSPs)
chr7 (53-121)||(27455932-27456000)
[»] chr5 (1 HSPs)
chr5 (53-121)||(40270956-40271024)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 389 - 479
Target Start/End: Complemental strand, 5373512 - 5373421
Alignment:
Q  389 attttctaataactttctcccgtttcctattatatatgcatctgt-ttttccgatcctgtctgtttcatcctttcaaatctagctttcatct 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5373512 attttctaataactttctcccgtttcctattatatatgcatctgttttttccgatcctgtctgtttcatcctttcaaatctagctttcatct 5373421  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 5373830 - 5373732
Alignment:
Q  53 gaggtcccacttaccaaacatgtgggttagcataatnnnnnnnntagcggttctttaatttttcttaaannnnnnnncgctgaatacagcattttccaac 152  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||        |||||||||||||||||||||||    
T  5373830 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttctttaatttttcttaaa-atattttcgctgaatacagcattttccaac 5373732  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 5373590 - 5373539
Alignment:
Q  310 ctcaaatctcctaaaatttctcaatcagacacatcatcatcaacatctgtgtt 362  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  5373590 ctcaaatctcgtaaaatttctcaatcagacacatcatcat-aacatctgtgtt 5373539  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 149
Target Start/End: Complemental strand, 10310738 - 10310642
Alignment:
Q  53 gaggtcccacttaccaaacatgtgggttagcataatnnnnnnnntagcggttctttaatttttcttaaannnnnnnncgctgaatacagcattttcc 149  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||        ||||||||||||||||||||    
T  10310738 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaaaaattcgctgaatacagcattttcc 10310642  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 30718076 - 30717984
Alignment:
Q  57 tcccacttaccaaacatgtgggttagcataatnnnnnnnntagcggttctttaatttttcttaaannnnnnnncgctgaatacagcattttcc 149  Q
    ||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||        ||||||||||||||||||||    
T  30718076 tcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttcttaaaaaaaatttcgctgaatacagcattttcc 30717984  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 27456000 - 27455932
Alignment:
Q  53 gaggtcccacttaccaaacatgtgggttagcataatnnnnnnnntagcggttctttaatttttcttaaa 121  Q
    ||||||||||||||||||||| ||||||||||||||        ||||||||||| |||||||||||||    
T  27456000 gaggtcccacttaccaaacatatgggttagcataataaaagaaatagcggttcttgaatttttcttaaa 27455932  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 40271024 - 40270956
Alignment:
Q  53 gaggtcccacttaccaaacatgtgggttagcataatnnnnnnnntagcggttctttaatttttcttaaa 121  Q
    ||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||| |||||    
T  40271024 gaggtcccacttaccaaacatgtgggttagcataataaaagaaatagcggttcttgaatttttgttaaa 40270956  T

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