View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14191_high_26 (Length: 239)
Name: NF14191_high_26
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 33538969 - 33539184
Alignment:
| Q |
1 |
tgcatatattaatgcattgtccttatagcaaccgagctaaactcacgatgacaaacaaaaagaactatctatgttatagattgtaagtgtaaaactttta |
100 |
Q |
| |
|
||||||||||||| |||| |||||| |||| || |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
33538969 |
tgcatatattaatacattatccttac--caactaagttaaacttacgaggacaaacaaaaagaactatctatgttagagattgtaagtgtaaagctttta |
33539066 |
T |
|
| Q |
101 |
atttgtcactcaaattgaagcagctgtttagttattatcaattgtctgcttccgttaaaatattgaaatggtgaacaaatgaccggagtcgttaannnnn |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33539067 |
atttgtcactcaaattgaagcagctgtttagttattatcaattgtctgcttccgttaaaatattgaaatggtgaacaaatgaccggagtcgttaattttt |
33539166 |
T |
|
| Q |
201 |
nnatttgttggatggaat |
218 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33539167 |
ttatttgttggatggaat |
33539184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 57 - 222
Target Start/End: Original strand, 33535642 - 33535807
Alignment:
| Q |
57 |
aaaaagaactatctatgttatagattgtaagtgtaaaacttttaatttgtcactcaaattgaagcagctgtttagttattatcaattgtctgcttccgtt |
156 |
Q |
| |
|
||||| ||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
33535642 |
aaaaaaaactatctaagttagagattgtaaacgtaaagcttttaatttgtcactcaaattgaagcagctgtttagttattatcaattttctacttccgtt |
33535741 |
T |
|
| Q |
157 |
aaaatattgaaatggtgaacaaatgaccggagtcgttaannnnnnnatttgttggatggaattgtt |
222 |
Q |
| |
|
|||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
33535742 |
aaaatattgatatggtggacaaatgaccagagtcgttaatttttttatttgttggatggaattgtt |
33535807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University