View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_high_5 (Length: 444)

Name: NF14191_high_5
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_high_5
NF14191_high_5
[»] chr3 (8 HSPs)
chr3 (19-438)||(53514998-53515417)
chr3 (61-383)||(53525878-53526199)
chr3 (261-390)||(53526541-53526670)
chr3 (261-388)||(53526306-53526433)
chr3 (257-390)||(53526419-53526553)
chr3 (257-381)||(53526654-53526778)
chr3 (313-390)||(53526240-53526318)
chr3 (198-351)||(53550092-53550245)
[»] chr5 (1 HSPs)
chr5 (141-229)||(16607976-16608062)


Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 53514998 - 53515417
Alignment:
Q  19 gtacaattatatgcagctctctattcaatacttgaagaactatattatgatacatgttagattaattttctcttcaactgtcttatgtattctcatataa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53514998 gtacaattatatgcagctctctattcaatacttgaagaactatattgtgatacatgttagattaattttctcttcaactgtcttatgtattctcatataa 53515097  T
Q  119 atttaggtttaaaatcggtgtcctctcatcctctcatattaattttcacttctactatcttatgtatattctaaaacagaccagaaaattgtgatacatg 218  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53515098 agttaggtttaaaatcggtgtcctctcatactctcatattaattttcacttctactatcttatgtatattctaaaacagaccagaaaattgtgatacatg 53515197  T
Q  219 gaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53515198 gaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagat 53515297  T
Q  319 tatacacatttcaaatcaaaatcaaacagaataccactcactttatgatgttttcatccttcctttccgtcagtaatactaataagccggtctttctctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53515298 tatacacatttcaaatcaaaatcaaacagaataccactcactttatgatgttttcatccttcctttccgtcagtaatactaataagccggtctttctctc 53515397  T
Q  419 aaccttgttattcttctcac 438  Q
    ||||||||||||||||||||    
T  53515398 aaccttgttattcttctcac 53515417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 61 - 383
Target Start/End: Original strand, 53525878 - 53526199
Alignment:
Q  61 tattatgatacatgttagattaattttctcttcaactgtcttatgtattctcatataaatttaggtttaaaa-tcggtgtcctctcatcctctcatatta 159  Q
    |||| ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| | | | ||||  |||||||||||||||    
T  53525878 tattgtgataaatgttagattaattttctcttcaactatcttatgtattctcatctaaatttaggttcaaaaattgttttccttacatcctctcatatta 53525977  T
Q  160 attttcacttctactatcttatgtatattctaaaacagaccagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatc 259  Q
    |||||| |||| |||||||||||||   |||||||| |||||||||||||||||||||||||||||||||  | ||||| |||| ||||||||| |||||    
T  53525978 attttctcttcaactatcttatgtaa--tctaaaactgaccagaaaattgtgatacatggaagctcttggctccgatgaaagaacttcagtccactgatc 53526075  T
Q  260 cttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcac 359  Q
    ||||||||||| ||||||||||   ||||||| ||||||||| |||| || | ||||| || ||| ||||||||||||||||||| |||||| |||||||    
T  53526076 cttcctttccgacaaactgaaacaaattccgggggcaacaatcacaaaacatgaaagaataaacatatttcaaatcaaaatcaaatagaatatcactcac 53526175  T
Q  360 tttatgatgttttcatccttcctt 383  Q
    | || || ||||||||||||||||    
T  53526176 tctacgaagttttcatccttcctt 53526199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 261 - 390
Target Start/End: Original strand, 53526541 - 53526670
Alignment:
Q  261 ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact 360  Q
    |||||||||||||||||||||   ||||| ||||||||||| |||| || | ||||| || |||||||||||||||||||||| ||||||||||||||||    
T  53526541 ttcctttccgtcaaactgaaacaaattccagaggcaacaatcacaaaacatgaaagaataaacacatttcaaatcaaaatcaatcagaataccactcact 53526640  T
Q  361 ttatgatgttttcatccttcctttccgtca 390  Q
     ||||| |||||||||||||| ||||||||    
T  53526641 ctatgaagttttcatccttccgttccgtca 53526670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 388
Target Start/End: Original strand, 53526306 - 53526433
Alignment:
Q  261 ttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccactcact 360  Q
    |||||||||||||||||||||   ||||| ||||||||||| | || || | |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  53526306 ttcctttccgtcaaactgaaacagattccagaggcaacaatcaaaaaacatgaaagattaaacacatttcaaatcaaaatcaaacaaaataccactcact 53526405  T
Q  361 ttatgatgttttcatccttcctttccgt 388  Q
     ||||  |||||||||||||||||||||    
T  53526406 ctatgtagttttcatccttcctttccgt 53526433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 53526419 - 53526553
Alignment:
Q  257 atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaat-accac 355  Q
    ||||||||||||||| ||||||||||| ||||| |||||| || | |||| ||   |||||||| ||||||||||||||||||||||| ||||| |||||    
T  53526419 atccttcctttccgttaaactgaaatgaattccagaggcagcagtcacaaaacacgaaagattaaacacatttcaaatcaaaatcaaatagaataaccac 53526518  T
Q  356 tcactttatgatgttttcatccttcctttccgtca 390  Q
    ||||| ||||| ||||| ||| |||||||||||||    
T  53526519 tcactctatgaagtttttatcattcctttccgtca 53526553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 53526654 - 53526778
Alignment:
Q  257 atccttcctttccgtcaaactgaaatgcattccggaggcaacaattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaataccact 356  Q
    |||||||| |||||||||||||||| | ||| ||| |||| |||| |||   | | |||||||| |||||||| ||||||||||||||||||||||||||    
T  53526654 atccttccgttccgtcaaactgaaacgaatttcgggggcagcaatcacacatcatgaaagattaaacacatttgaaatcaaaatcaaacagaataccact 53526753  T
Q  357 cactttatgatgttttcatccttcc 381  Q
    |||| ||||| ||||| ||||||||    
T  53526754 cactctatgaagtttttatccttcc 53526778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 53526240 - 53526318
Alignment:
Q  313 aaagattatacacatttcaaatcaaaatcaaacagaat-accactcactttatgatgttttcatccttcctttccgtca 390  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||| | | |||||||||||||    
T  53526240 aaagattaaacacatttcaaatcaaaatcaaacagaataaccactcactctatgaagtttttagcattcctttccgtca 53526318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 351
Target Start/End: Original strand, 53550092 - 53550245
Alignment:
Q  198 accagaaaattgtgatacatggaagctcttggaacagatgacagaatttcagtccattgatccttcctttccgtcaaactgaaatgcattccggaggcaa 297  Q
    |||| |||||||||||| | | ||||||||||  |  |||| |||||||||||||| || |||||| |||||| || |||||||   ||||| || |||     
T  53550092 accaaaaaattgtgatagacgaaagctcttggctcccatgaaagaatttcagtccactgctccttcttttccgccagactgaaaccaattccagaagcag 53550191  T
Q  298 caattacaagacttaaaagattatacacatttcaaatcaaaatcaaacagaata 351  Q
    || | |||| || | ||| |||| ||||||| ||||||| ||||||||||||||    
T  53550192 cagtcacaaaacatgaaaaattaaacacattccaaatcagaatcaaacagaata 53550245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 16608062 - 16607976
Alignment:
Q  141 ctctcatcctctcatattaattttcacttctactatcttatgtatattctaaaacagaccagaaaattgtgatacatggaagctcttgg 229  Q
    |||| ||||| | |||||||||||| |||| ||||||||||||||  ||||||||  |||||||||| |||||| ||||| ||||||||    
T  16608062 ctcttatcctttaatattaattttctcttccactatcttatgtat--tctaaaaccaaccagaaaatggtgatagatggatgctcttgg 16607976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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