View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_1 (Length: 522)
Name: NF14191_low_1
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_1 |
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| [»] chr1 (10 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 16 - 522
Target Start/End: Complemental strand, 16071680 - 16071174
Alignment:
| Q |
16 |
caaagataacaaggattgtaatgacaattggcaactacttgcgtgtaggtttgaacgggaagtacctcgatgcattaactcaatttgcaagtgcatgcca |
115 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16071680 |
caaagataacaatgattgtaataacaattggcaactacttgcgtgtaggtttgaacgggaagtacctcgatgcattaactcaatttgcaagtgcatgcca |
16071581 |
T |
|
| Q |
116 |
atgtaactatcaacatgcaaaataattatatgttacatataatttatttatgtcataatgttcgtactttaataatattatatgcactttgatttatgtt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16071580 |
atgtgactatcaacatgcaaaataattatatgttacatataatttatttatgtcataatgttcgtactttaataatattatatgcactttgatttatgtt |
16071481 |
T |
|
| Q |
216 |
tatcttaccttttttgaattatttttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtccccaatatttgtaattttt |
315 |
Q |
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| T |
16071480 |
tatgttaccttttttgaattatttttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtccccaatatttgtaattctt |
16071381 |
T |
|
| Q |
316 |
attttcctgtgatttattaataataattttatattgctacaagttatatcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggac |
415 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16071380 |
attttcctgtgatttattaataataattttatagtgctacaagttatatcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggac |
16071281 |
T |
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| Q |
416 |
tttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgttacataattattagtctcttgaata |
515 |
Q |
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| T |
16071280 |
tttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgttacataattattagtctcttgaata |
16071181 |
T |
|
| Q |
516 |
aattacc |
522 |
Q |
| |
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||||||| |
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| T |
16071180 |
aattacc |
16071174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 238 - 514
Target Start/End: Complemental strand, 16084054 - 16083776
Alignment:
| Q |
238 |
ttttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtcccc--aatatttgtaatttttattttcctgtgatttattaa |
335 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
16084054 |
ttttaataagggacatgctgaaatcacttggttaacttttattggattttggtatactccccccaatatttgtaattattattttcctgtgatttattaa |
16083955 |
T |
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| Q |
336 |
taataattttatattgctacaagttatatcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggactttgtattttctttaataaa |
435 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| |||||||| ||||| |
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| T |
16083954 |
taataattttatagtgcttcaagttatatcataatcatgggaggccaacataatatagatgacatgtttgtcacttacactttgttttttcttttataaa |
16083855 |
T |
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| Q |
436 |
tgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgttacataattattagtctcttgaat |
514 |
Q |
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| T |
16083854 |
tgtttcgtcaacctttaaatctctttgacaataacaaaataaaaattaacaatgttacataattatcagtcacttgaat |
16083776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 240 - 481
Target Start/End: Complemental strand, 16054551 - 16054306
Alignment:
| Q |
240 |
ttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtcccc--aatatttgtaatttttattttcctgtgatttattaata |
337 |
Q |
| |
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|||| |||||||||||| |||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||| | | ||||||| ||| |
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| T |
16054551 |
ttaacaagggacattctaaaatcacttggttaacttttattaggttttggtctagtcccctcaatatttgtaattttcatttttcatttatttatttata |
16054452 |
T |
|
| Q |
338 |
ataattttatattgctacaagttata--tcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggactttgtattttctttaataaa |
435 |
Q |
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||||||||| | |||| ||| ||||| | ||||| |||||| ||||||||||| |||||| || ||||| | ||| ||||||| ||||||| || ||| |
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| T |
16054451 |
ataattttagagtgctgcaaattatagattataataatgggaagccaacatagtttagatgtcaagtttgtcatttgcactttgttttttcttgaaaaaa |
16054352 |
T |
|
| Q |
436 |
tgtttcgccagcctttaaatctctttgacaagaacaaaataaaaat |
481 |
Q |
| |
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||||||||| |||||||||||| |||||||| ||||| |||||||| |
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| T |
16054351 |
tgtttcgcctgcctttaaatctttttgacaataacaatataaaaat |
16054306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 16084223 - 16084128
Alignment:
| Q |
130 |
atgcaaaataattatatgttacatataatttattt--atgtcataatgttcgtactttaataatattatatgcactttgatttatgtttatcttac |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||| |
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| T |
16084223 |
atgcaaaataattatatgttacatataagttatttgtatgtcataatgttcgtactttgataatatcatatgcactttgatttatgtttatgttac |
16084128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 468
Target Start/End: Complemental strand, 16357093 - 16356858
Alignment:
| Q |
238 |
ttttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtccc-caatatttgtaatttttattttcctgtgatttattaat |
336 |
Q |
| |
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|||||||||||||||| |||||||| |||||||||||||||| ||||||| | ||||||| ||| |||||||||| | ||||| | | |||||||||| |
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| T |
16357093 |
ttttaataagggacatgctgaaatctcttggttaacttttatttggttttgatctagtccctcaaaatttgtaattctcatttttattttatttattaat |
16356994 |
T |
|
| Q |
337 |
aataattttatattgctacaagt----tatatcataatcatgggaggccaacatagtatagatgacatgtttgcaacttggactttgtattttctttaat |
432 |
Q |
| |
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|||||||||| | |||| || | ||||| |||||||||| | ||||||| ||| |||||| |||||||| | || ||||||| || |||||| |
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| T |
16356993 |
aataattttagagtgctgaaaattatatatattataatcatggaaagccaacaaagtttagatgtcatgtttgtcattttcactttgttttcactttaaa |
16356894 |
T |
|
| Q |
433 |
aaatgtttcgccagcctttaaatctctttgacaaga |
468 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| |
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| T |
16356893 |
aaatgtttcgcctatctttaaatctccttgacaaga |
16356858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 15813745 - 15813645
Alignment:
| Q |
118 |
gtaactatcaacatgcaaaataattatatgttacatataatttattt--atgtcataatgttcgtactttaataatattatatgcactttgatttatgtt |
215 |
Q |
| |
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||||||||||| ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||||| |
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| T |
15813745 |
gtaactatcaatatgtaaaataattat--gttacatataatttatttgtatgtcataatgttcgtactttgataatatcatatgcaatttgatttatgtt |
15813648 |
T |
|
| Q |
216 |
tat |
218 |
Q |
| |
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||| |
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| T |
15813647 |
tat |
15813645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 300 - 506
Target Start/End: Complemental strand, 16028155 - 16027942
Alignment:
| Q |
300 |
aatatttgtaatttttattttcctgtgatttattaataataattttatattgctacaagttata--tcataatcatg--ggaggccaacatagtatagat |
395 |
Q |
| |
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||||||| ||||| | ||||| || | |||||||||||||||||||| |||||| ||| ||||| | |||||||| | ||||||||||||| ||||| |
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| T |
16028155 |
aatatttctaattctcatttttcttttatttattaataataattttacattgctgcaaattatagattataatcatatcgaaggccaacatagtttagat |
16028056 |
T |
|
| Q |
396 |
gacatgtttgcaacttggactttgtattttctttaataaatgtttcgccagcctttaaatctctttgacaagaacaaaataaaaattatcaatgt---ta |
492 |
Q |
| |
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| ||||| || | || ||||||| ||| |||||| |||| |||| | ||| |||||||||||||| |||||||| ||||||| || |||||| || |
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| T |
16028055 |
gtcatgtatgtcattttcactttgtttttgctttaaaaaatatttctcttgccattaaatctctttgaaaagaacaatataaaaaataacaatgtcaata |
16027956 |
T |
|
| Q |
493 |
cataattattagtc |
506 |
Q |
| |
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|||||| ||||||| |
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| T |
16027955 |
cataatgattagtc |
16027942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 16029708 - 16029597
Alignment:
| Q |
117 |
tgtaactatcaacatgcaaaataattatatgttacatataatttatttatgtca-taatgttcgtactttaataatattatatgcactttgatttatgtt |
215 |
Q |
| |
|
|||||| || || ||| ||||| |||||||| || ||||||| ||||| | | | |||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
16029708 |
tgtaaccattaatatgtaaaatgattatatgctatatataatgtatttgtatgaataatgttcttactttaataataacctatgcactttgatttatgtt |
16029609 |
T |
|
| Q |
216 |
tatcttaccttt |
227 |
Q |
| |
|
||| |||||||| |
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| T |
16029608 |
tatgttaccttt |
16029597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 16054682 - 16054652
Alignment:
| Q |
134 |
aaaataattatatgttacatataatttattt |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
16054682 |
aaaataattatatgttacatataatttattt |
16054652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 16084393 - 16084331
Alignment:
| Q |
71 |
cgggaagtacctcgatgcattaactcaatttgcaagtgcatgccaatgtaactatcaacatgc |
133 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||||| | ||||||||||| |||| |
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|
| T |
16084393 |
cgggaaatacctcaatgcattaactcaatttgtaagtgcatgaaagggtaactatcaatatgc |
16084331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 236 - 363
Target Start/End: Original strand, 7771711 - 7771838
Alignment:
| Q |
236 |
atttttaataagggacattctgaaatcatttggttaacttttattgggttttggtatagtccccaatatttgtaatttttattttcctgtgatttattaa |
335 |
Q |
| |
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|||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| | | ||||||| |
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| T |
7771711 |
atttttaataagggacatgttgaaatccattggttaacttttattgggttttggtctagtccccaatatttgtaattatcattttccttttaattattaa |
7771810 |
T |
|
| Q |
336 |
taataattttatattgctacaagttata |
363 |
Q |
| |
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||||||||||| | |||| ||| ||||| |
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| T |
7771811 |
taataattttagagtgctgcaaattata |
7771838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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