View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_low_11 (Length: 373)

Name: NF14191_low_11
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_low_11
NF14191_low_11
[»] chr5 (4 HSPs)
chr5 (1-276)||(6046073-6046348)
chr5 (268-357)||(6045300-6045389)
chr5 (1-36)||(12401192-12401227)
chr5 (1-36)||(32873185-32873220)
[»] chr2 (6 HSPs)
chr2 (1-36)||(39744630-39744665)
chr2 (1-36)||(14797686-14797721)
chr2 (1-36)||(39737722-39737757)
chr2 (1-39)||(31635846-31635884)
chr2 (1-38)||(3196123-3196160)
chr2 (3-36)||(13466113-13466146)
[»] chr8 (6 HSPs)
chr8 (3-36)||(40608513-40608546)
chr8 (1-36)||(7376506-7376541)
chr8 (3-36)||(9431323-9431356)
chr8 (1-38)||(12659050-12659087)
chr8 (3-36)||(33817156-33817189)
chr8 (10-38)||(39259099-39259127)
[»] chr7 (4 HSPs)
chr7 (1-36)||(9055267-9055302)
chr7 (1-36)||(21037270-21037305)
chr7 (1-35)||(2756965-2756999)
chr7 (1-41)||(41985125-41985165)
[»] chr4 (8 HSPs)
chr4 (1-36)||(36812439-36812474)
chr4 (1-36)||(39881066-39881101)
chr4 (1-36)||(43358613-43358648)
chr4 (1-36)||(55595949-55595984)
chr4 (2-36)||(50980602-50980636)
chr4 (3-36)||(149325-149358)
chr4 (3-36)||(55996422-55996455)
chr4 (1-33)||(16019479-16019511)
[»] chr3 (2 HSPs)
chr3 (1-36)||(31017430-31017465)
chr3 (1-33)||(33007363-33007395)
[»] chr1 (4 HSPs)
chr1 (1-36)||(3606130-3606165)
chr1 (1-36)||(27810283-27810318)
chr1 (3-36)||(30505374-30505407)
chr1 (1-38)||(33076117-33076154)
[»] chr6 (1 HSPs)
chr6 (1-33)||(3049566-3049598)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6046348 - 6046073
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctcctagtatatttattgttaaaattatttttgatgacatctctgttgtttatgttaatagatttt- 99  Q
    ||||||||||||||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  6046348 agttgttagaaattggttgttcaaatataatttctactagtgtatttattgttaaaattattttt-atgacatctctgttgtttatgttaatagattttt 6046250  T
Q  100 attttttcttgcaaatgaagaaatgataagaatatttttgaaagatattaactagttttaaggtagtctccagccccaggtattcnnnnnnnnnnntggt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           ||||    
T  6046249 attttttcttgcaaatgaagaaatgataagaatatttttgaaagatattaactagttttaaggtagtctcgagccccaggtattcaaaaaaaaaaatggt 6046150  T
Q  200 atctccagatattttatctatattgcttcttctatctttattaatgaaatgtattagattcttactattaaaaaata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6046149 atctccagatattttatctatattgcttcttctatctttattaatgaaatgtattagattcttactattaaaaaata 6046073  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 268 - 357
Target Start/End: Complemental strand, 6045389 - 6045300
Alignment:
Q  268 taaaaaataacaatagtggtgattggttttcttttttaatagcaaatgaattattgtgtgtatataaaagtaaatgggagtacaggaatg 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6045389 taaaaaataacaatagtggtgattggttttcttttttaatagcaaatgaattattgtgtgtatataaaagtaaatgggagtacaggaatg 6045300  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12401227 - 12401192
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  12401227 agttgttacaaattgattgtacaaatatcatttctc 12401192  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32873185 - 32873220
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32873185 agttgttagaaattggttgtacaaatatcatttctc 32873220  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39744630 - 39744665
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  39744630 agttgttagaaattgattgtacaaatatcatttctc 39744665  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14797686 - 14797721
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  14797686 agttgttagaaattggttgtacaaatatcatttctc 14797721  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39737722 - 39737757
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  39737722 agttgttagaaattggttgtacaaatatcatttctc 39737757  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31635846 - 31635884
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctccta 39  Q
    |||||||||||| || |||||||||||||||||||||||    
T  31635846 agttgttagaaaatggttgtacaaatatcatttctccta 31635884  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3196123 - 3196160
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctcct 38  Q
    |||||| | |||||||||||||||||||||||||||||    
T  3196123 agttgtcacaaattgattgtacaaatatcatttctcct 3196160  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 13466113 - 13466146
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  13466113 ttgttagaaattggttgtacaaatatcatttctc 13466146  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 40608546 - 40608513
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||||||||||||||||||||||    
T  40608546 ttgttagaaattgattgtacaaatatcatttctc 40608513  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7376541 - 7376506
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  7376541 agttgttagaaattggttgtacaaatatcatttctc 7376506  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 9431323 - 9431356
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||||||||||| ||||||||||    
T  9431323 ttgttagaaattgattgtacaaagatcatttctc 9431356  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12659087 - 12659050
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctcct 38  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  12659087 agttgttaaaaattggttgtacaaatatcatttctcct 12659050  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 33817189 - 33817156
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||| |||||||||||||||||||||||||||    
T  33817189 ttgttacaaattgattgtacaaatatcatttctc 33817156  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 39259099 - 39259127
Alignment:
Q  10 aaattgattgtacaaatatcatttctcct 38  Q
    |||||||||||||||||||||||||||||    
T  39259099 aaattgattgtacaaatatcatttctcct 39259127  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 9055302 - 9055267
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  9055302 agttgttagaaattggttgtacaaatatcatttctc 9055267  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21037270 - 21037305
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||||||||||| |||||||||||||||||||||    
T  21037270 agttgttagaaattaattgtacaaatatcatttctc 21037305  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 2756965 - 2756999
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttct 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  2756965 agttgttagaaattggttgtacaaatatcatttct 2756999  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41985125 - 41985165
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctcctagt 41  Q
    |||||| | ||||||||||||||||||||||||||| ||||    
T  41985125 agttgtcacaaattgattgtacaaatatcatttctcttagt 41985165  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 36812439 - 36812474
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  36812439 agttgttagaaattggttgtacaaatatcatttctc 36812474  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 39881066 - 39881101
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  39881066 agttgttagaaaatgattgtacaaatatcatttctc 39881101  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 43358648 - 43358613
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  43358648 agttgttagaaattggttgtacaaatatcatttctc 43358613  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 55595984 - 55595949
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  55595984 agttgttagaaattggttgtacaaatatcatttctc 55595949  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 50980636 - 50980602
Alignment:
Q  2 gttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||| |||||||||||||||||||||||    
T  50980636 gttgttagaaaatgattgtacaaatatcatttctc 50980602  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 149325 - 149358
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  149325 ttgttagaaattggttgtacaaatatcatttctc 149358  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 55996455 - 55996422
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||||||| |||||||||||||||||||||||    
T  55996455 ttgttagaaaatgattgtacaaatatcatttctc 55996422  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16019511 - 16019479
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcattt 33  Q
    |||||||||||| ||||||||||||||||||||    
T  16019511 agttgttagaaaatgattgtacaaatatcattt 16019479  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31017430 - 31017465
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    |||||||||||| |||||||||||||||||||||||    
T  31017430 agttgttagaaaatgattgtacaaatatcatttctc 31017465  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33007395 - 33007363
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcattt 33  Q
    |||||| ||||||||||||||||||||||||||    
T  33007395 agttgtgagaaattgattgtacaaatatcattt 33007363  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3606130 - 3606165
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  3606130 agttgttagaaattggttgtacaaatatcatttctc 3606165  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27810283 - 27810318
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  27810283 agttgttagaaattggttgtacaaatatcatttctc 27810318  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 30505374 - 30505407
Alignment:
Q  3 ttgttagaaattgattgtacaaatatcatttctc 36  Q
    ||||||||||||| ||||||||||||||||||||    
T  30505374 ttgttagaaattggttgtacaaatatcatttctc 30505407  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33076154 - 33076117
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcatttctcct 38  Q
    |||||||||||| || ||||||||||||||||||||||    
T  33076154 agttgttagaaaatggttgtacaaatatcatttctcct 33076117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3049566 - 3049598
Alignment:
Q  1 agttgttagaaattgattgtacaaatatcattt 33  Q
    |||||||||||| ||||||||||||||||||||    
T  3049566 agttgttagaaaatgattgtacaaatatcattt 3049598  T

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