View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_low_12 (Length: 373)

Name: NF14191_low_12
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_low_12
NF14191_low_12
[»] chr8 (6 HSPs)
chr8 (19-366)||(15349425-15349772)
chr8 (57-141)||(4030191-4030275)
chr8 (63-121)||(12200913-12200971)
chr8 (63-121)||(12445341-12445399)
chr8 (63-104)||(12195898-12195939)
chr8 (63-104)||(12440326-12440367)
[»] chr4 (29 HSPs)
chr4 (65-340)||(48886828-48887101)
chr4 (65-340)||(48871142-48871415)
chr4 (65-340)||(48876446-48876719)
chr4 (71-228)||(7237065-7237222)
chr4 (62-141)||(45365623-45365702)
chr4 (57-141)||(45384293-45384377)
chr4 (58-107)||(49043605-49043654)
chr4 (71-123)||(7908884-7908936)
chr4 (57-141)||(48155826-48155910)
chr4 (57-201)||(50669656-50669801)
chr4 (71-232)||(37826304-37826466)
chr4 (72-227)||(48863848-48863999)
chr4 (71-123)||(7905160-7905212)
chr4 (67-123)||(45371492-45371548)
chr4 (165-232)||(48853347-48853412)
chr4 (71-141)||(7801225-7801295)
chr4 (71-141)||(7823557-7823627)
chr4 (65-99)||(49048000-49048034)
chr4 (71-112)||(7814065-7814106)
chr4 (71-144)||(48147113-48147186)
chr4 (72-105)||(48734859-48734892)
chr4 (337-366)||(48871450-48871479)
chr4 (337-366)||(48876754-48876783)
chr4 (337-366)||(48887136-48887165)
chr4 (71-123)||(7771977-7772029)
chr4 (188-228)||(7772095-7772135)
chr4 (71-123)||(7790662-7790714)
chr4 (188-228)||(7790780-7790820)
chr4 (57-101)||(50666880-50666924)
[»] chr5 (4 HSPs)
chr5 (57-232)||(29688700-29688876)
chr5 (63-186)||(9120343-9120472)
chr5 (137-232)||(29696896-29696989)
chr5 (269-341)||(29688873-29688946)
[»] chr3 (5 HSPs)
chr3 (61-121)||(47451323-47451383)
chr3 (268-335)||(11005184-11005251)
chr3 (269-335)||(11023754-11023820)
chr3 (64-105)||(11014933-11014974)
chr3 (68-105)||(11023945-11023982)
[»] chr2 (2 HSPs)
chr2 (57-141)||(29350996-29351080)
chr2 (188-232)||(29351122-29351166)
[»] chr1 (2 HSPs)
chr1 (66-141)||(24340994-24341069)
chr1 (66-141)||(24353359-24353434)
[»] chr6 (1 HSPs)
chr6 (64-138)||(21016402-21016476)
[»] chr7 (1 HSPs)
chr7 (72-100)||(30119715-30119743)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 15349425 - 15349772
Alignment:
Q  19 agagcgttccccccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349425 agagcgttccccccattgggagagtttatggggtgttagatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggct 15349524  T
Q  119 taagaggacgacgcaaacaagaatgaagttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggc 218  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15349525 taagaggacgacgcaaacaagaatgaggttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatgac 15349624  T
Q  219 tgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349625 tgcatttgtagggtcgtatcgtatgactttgcttgcatttctgcatttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatg 15349724  T
Q  319 agcttatgcaatatgttatgaaaatgttgacaactttaattgtctgtg 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349725 agcttatgcaatatgttatgaaaatgttgacaactttaattgtctgtg 15349772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 4030275 - 4030191
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    |||| |||||| | ||||| ||||||||||||||||||||||||||| | |||||||| |||||||| || ||| ||||||||||    
T  4030275 gatctcaagtgaccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgactcaaacaagaa 4030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 12200913 - 12200971
Alignment:
Q  63 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12200913 aagtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12200971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 12445341 - 12445399
Alignment:
Q  63 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 121  Q
    ||||||| ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  12445341 aagtggcgatgtatacagagtctctgctttcactccctggtgatcgtgagcaggtttaa 12445399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 12195898 - 12195939
Alignment:
Q  63 aagtggctatgtatacagagtctctgctttcactccctggtg 104  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  12195898 aagtggccatgtatacagagtctctgctttcactccctggtg 12195939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 12440326 - 12440367
Alignment:
Q  63 aagtggctatgtatacagagtctctgctttcactccctggtg 104  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  12440326 aagtggccatgtatacagagtctctgctttcactccctggtg 12440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 48886828 - 48887101
Alignment:
Q  65 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctc 161  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||    
T  48886828 gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctc 48886927  T
Q  162 cttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctg 261  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| ||    
T  48886928 cttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttatg 48887022  T
Q  262 catttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 340  Q
    ||| || |||||  ||||||||||||| ||||||| ||||||||||||| ||||||||||||||  |||||||||||||    
T  48887023 catatgagggtatcatgtgtttgattgcatttgtaatatgattcagtataccgcatgagcttatttaatatgttatgaa 48887101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 48871142 - 48871415
Alignment:
Q  65 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctc 161  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||    
T  48871142 gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctc 48871241  T
Q  162 cttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctg 261  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| ||    
T  48871242 cttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttttg 48871336  T
Q  262 catttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 340  Q
    ||| || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| ||||||  |||||||||||||    
T  48871337 catatgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatttaatatgttatgaa 48871415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 65 - 340
Target Start/End: Original strand, 48876446 - 48876719
Alignment:
Q  65 gtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctc 161  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||||||| |||||| |  ||| ||||||||||   ||| ||||| | ||||||||    
T  48876446 gtggctatctatacagagtctttgctttcactccctggtgacaatgagcaggtttaagaaggtgacacaaacaagaagaatgaggttttgaattattctc 48876545  T
Q  162 cttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggtcgtatcgtatgactttgcttgcatttctg 261  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||||     |  |||||||||| || ||||| ||    
T  48876546 cttcaccattttcttgatatttataacattatattgaattatgtactgttgggtgtctgcatttgtaggg-----taatatgactttgattccatttttg 48876640  T
Q  262 catttgtgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgttatgaa 340  Q
    ||| || |||||||| ||||||||||| ||||||| ||||||||||||| || |||| ||||||  |||||||||||||    
T  48876641 catatgagggtaatacgtgtttgattgcatttgtaatatgattcagtataccacatgtgcttatttaatatgttatgaa 48876719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 7237222 - 7237065
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaag---aatgaagttttcagttattctccttcac 167  Q
    |||||||||||||||||||||||||||| |||||| |||||||| |||||| | || ||| ||||||||   ||||| ||| | |  ||||||||||||     
T  7237222 atgtatacagagtctctgctttcactccttggtgacaatgagcatgcttaa-aagatgacacaaacaagaacaatgatgttgtgaaatattctccttcat 7237124  T
Q  168 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgta 228  Q
      |||| || ||||||||  ||||||||||| ||||||||| |||| ||| ||||||||||    
T  7237123 tgttttctttatatttat--aattatattgttttatgtactcttggttggttgcatttgta 7237065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 45365702 - 45365623
Alignment:
Q  62 caagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    |||||||| ||||||||||||||| |||| ||||| |||||||| |||||||| |||||||| || ||| ||||||||||    
T  45365702 caagtggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45365623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 45384377 - 45384293
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    |||| ||||||||  |||||||||||||||| ||||||||  ||||||| |||||||| |||||||| || ||| ||||||||||    
T  45384377 gatctcaagtggccgtgtatacagagtctctcctttcactttctggtgacaatgagcaagcttaagaagatgacacaaacaagaa 45384293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 49043654 - 49043605
Alignment:
Q  58 atcccaagtggctatgtatacagagtctctgctttcactccctggtgata 107  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  49043654 atcccaagtggctatctatacagagtctttgctttcactccccggtgata 49043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7908884 - 7908936
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 123  Q
    |||||||| |||||||||||||||||||||||||| |||||||| | ||||||    
T  7908884 atgtataccgagtctctgctttcactccctggtgacaatgagcaagtttaaga 7908936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 48155910 - 48155826
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||| |||| ||| || ||||| |||  | ||||||||||    
T  48155910 gatcccaagtgaccgtgtatacagagtctttgctttcactccctggtgacaatgtgcaagcctaagaagacatcacaaacaagaa 48155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 201
Target Start/End: Original strand, 50669656 - 50669801
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaa----gttttca 152  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| | ||   |||| || | | || | || ||| |||||||||| |||    ||||| |    
T  50669656 gatccaaagtggctatgtatacagagtctctactttcactccccgctgtccatgaacaagttcaaaaagatgacacaaacaagaa-gaacaaggttttga 50669754  T
Q  153 gttattctccttcaccattttattgatatttataaaattatattgtatt 201  Q
      |||||||||||||||||||||| ||||||||  ||||||||||||||    
T  50669755 aatattctccttcaccattttatttatatttat--aattatattgtatt 50669801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 232
Target Start/End: Complemental strand, 37826466 - 37826304
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa---tgaagttttcagttattctccttcac 167  Q
    |||||||| ||||||||||||||| |||||| |||    ||||| | |||||| || ||  ||||||||||   ||| ||||  |  |||||||||||||    
T  37826466 atgtatacggagtctctgctttcattccctgttgacggagagcaagtttaagaagatgatacaaacaagaagaatgaggtttcaaaatattctccttcac 37826367  T
Q  168 cattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 232  Q
    |||||| |||||||||  ||  ||||||||||||||| ||| |||| || ||| |||||||||||    
T  37826366 cattttcttgatattttcaa--ttatattgtattatgaactcttgggtgtctggatttgtagggt 37826304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 48863848 - 48863999
Alignment:
Q  72 tgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatgaagttttcagttattctccttcaccatt 171  Q
    |||||||||||||||||||||||||||||  ||| | |||||| |||||||| || ||| | || ||  |||| ||||  |  |||||||||  ||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgacaccaagaatcatgaggttt--aaatattctcctggaccatt 48863945  T
Q  172 ttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgt 227  Q
    || | |||||||||  ||||||||||| ||||| ||  || | |||||||||||||    
T  48863946 ttctggatatttat--aattatattgttttatgaaccattcggtggctgcatttgt 48863999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7905160 - 7905212
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 123  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | ||||||    
T  7905160 atgtatacggagtctctgctttcactccccggtgataacgagcaagtttaaga 7905212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 45371548 - 45371492
Alignment:
Q  67 ggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 123  Q
    ||||||||||||||||||||||||||||||| || | || ||||| || ||||||||    
T  45371548 ggctatgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaaga 45371492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 48853347 - 48853412
Alignment:
Q  165 caccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 232  Q
    |||||||||||||||  ||||||   |||||||||||||||||| |||||| ||||||||| ||||||    
T  48853347 caccattttattgattattataac--tatattgtattatgtacttttggatagctgcatttttagggt 48853412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 7801225 - 7801295
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7801225 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7801295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 7823557 - 7823627
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    |||||||| ||||||||||||||||||||||| || |||||| | | |||||| || |||  |||||||||    
T  7823557 atgtataccgagtctctgctttcactccctggggacaatgagtaagtttaagaagatgacaaaaacaagaa 7823627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 49048034 - 49048000
Alignment:
Q  65 gtggctatgtatacagagtctctgctttcactccc 99  Q
    ||||||||||||||||||||| |||||||||||||    
T  49048034 gtggctatgtatacagagtctttgctttcactccc 49048000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 7814065 - 7814106
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgag 112  Q
    |||||||| ||||||||||||||||||||||| || ||||||    
T  7814065 atgtataccgagtctctgctttcactccctggggacaatgag 7814106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 48147186 - 48147113
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaatga 144  Q
    |||||||| ||||||||||||||||||||| |||| |||| ||   | ||||| || ||| |||||||||||||    
T  48147186 atgtatactgagtctctgctttcactccctagtgacaatgtgctaccctaagaagatgacacaaacaagaatga 48147113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 48734892 - 48734859
Alignment:
Q  72 tgtatacagagtctctgctttcactccctggtga 105  Q
    |||||||||||||||||||||||||||| |||||    
T  48734892 tgtatacagagtctctgctttcactccccggtga 48734859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 48871450 - 48871479
Alignment:
Q  337 tgaaaatgttgacaactttaattgtctgtg 366  Q
    ||||||||||||||||||||||||||||||    
T  48871450 tgaaaatgttgacaactttaattgtctgtg 48871479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 48876754 - 48876783
Alignment:
Q  337 tgaaaatgttgacaactttaattgtctgtg 366  Q
    ||||||||||||||||||||||||||||||    
T  48876754 tgaaaatgttgacaactttaattgtctgtg 48876783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 366
Target Start/End: Original strand, 48887136 - 48887165
Alignment:
Q  337 tgaaaatgttgacaactttaattgtctgtg 366  Q
    ||||||||||||||||||||||||||||||    
T  48887136 tgaaaatgttgacaactttaattgtctgtg 48887165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7771977 - 7772029
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 123  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7771977 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7772029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 7772095 - 7772135
Alignment:
Q  188 aattatattgtattatgtactgttggatggctgcatttgta 228  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7772095 aattatattgttttatgtactcttgggtggctgcatttgta 7772135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 7790662 - 7790714
Alignment:
Q  71 atgtatacagagtctctgctttcactccctggtgataatgagcaggcttaaga 123  Q
    ||||||||||| |||||||||||||| | |||||| |||||||| | ||||||    
T  7790662 atgtatacagaatctctgctttcactacttggtgacaatgagcatgattaaga 7790714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 7790780 - 7790820
Alignment:
Q  188 aattatattgtattatgtactgttggatggctgcatttgta 228  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  7790780 aattatattgttttatgtactcttgggtggctgcatttgta 7790820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 50666880 - 50666924
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctg 101  Q
    ||||||||||||  ||||||||||||||||| |||||||| ||||    
T  50666880 gatcccaagtggtcatgtatacagagtctctactttcacttcctg 50666924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 29688700 - 29688876
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataa---tgagcaggcttaagaggacgacgcaaacaagaatgaagttttcag 153  Q
    |||||| ||||| |||||||||||| |||||||||||||| ||||||| | |   ||| ||||||||||| || |||||| |||||||||| |||||||     
T  29688700 gatccctagtggttatgtatacagaatctctgctttcacttcctggtggtgacagtgatcaggcttaagaagatgacgcagacaagaatgaggttttcaa 29688799  T
Q  154 ttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 232  Q
     ||||| |||||||||||||  |||| |||||  |||||||| |||||||||||| |||  |||||||||| |||||||    
T  29688800 gtattccccttcaccattttcatgatctttat--aattatatagtattatgtactcttgagtggctgcattcgtagggt 29688876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 9120343 - 9120472
Alignment:
Q  63 aagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaac------aagaatgaagttttcagtta 156  Q
    |||||||| | |||||||||||||||||||||||||||||||| ||||| || |||||||  || ||| |||||      |||||||| ||||| |  ||    
T  9120343 aagtggctctttatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgacacaaacaagaagaagaatgaggttttgaaata 9120442  T
Q  157 ttctccttcaccattttattgatatttata 186  Q
    ||||||||||||||||| ||||| ||||||    
T  9120443 ttctccttcaccattttcttgatttttata 9120472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 232
Target Start/End: Original strand, 29696896 - 29696989
Alignment:
Q  137 aagaatgaagttttcagttattctccttcaccattttattgatatttataaaattatattgtattatgtactgttggatggctgcatttgtagggt 232  Q
    |||||||| ||||| |  |||||| ||||||||||||  |||| |||||||  ||||||||||||||| ||| |||  | ||||||||||||||||    
T  29696896 aagaatgaggttttgaagtattcttcttcaccattttcatgatctttataa--ttatattgtattatggactcttgagtagctgcatttgtagggt 29696989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 341
Target Start/End: Original strand, 29688873 - 29688946
Alignment:
Q  269 gggtaatatgtgtttgattgaatttgtagtatgattc-agtatgccgcatgagcttatgcaatatgttatgaaa 341  Q
    |||||||||||||||||||| ||||||| |||||| | |||||| |  ||||||| ||| ||||||| ||||||    
T  29688873 gggtaatatgtgtttgattgcatttgtaatatgatccaagtatggcaaatgagctgatgaaatatgtcatgaaa 29688946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 47451383 - 47451323
Alignment:
Q  61 ccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaa 121  Q
    |||||||| |||||| |||||||||||||||||||| || ||||| |||||||| ||||||    
T  47451383 ccaagtggttatgtacacagagtctctgctttcacttcccggtgacaatgagcaagcttaa 47451323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 11005251 - 11005184
Alignment:
Q  268 tgggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgtt 335  Q
    ||||||||||||||| |||||  |||||| |||||| ||||||||| |||||||| ||| ||||||||    
T  11005251 tgggtaatatgtgttcgattgtgtttgtaatatgatccagtatgccacatgagctaatgtaatatgtt 11005184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 11023820 - 11023754
Alignment:
Q  269 gggtaatatgtgtttgattgaatttgtagtatgattcagtatgccgcatgagcttatgcaatatgtt 335  Q
    ||||||||||||||||||||  |||||| |||||| ||||||||| |||||||| ||| | ||||||    
T  11023820 gggtaatatgtgtttgattgtgtttgtaatatgatccagtatgccacatgagctaatgtactatgtt 11023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 11014974 - 11014933
Alignment:
Q  64 agtggctatgtatacagagtctctgctttcactccctggtga 105  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  11014974 agtggttatgtacacagagtctctgctttcactccctggtga 11014933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 11023982 - 11023945
Alignment:
Q  68 gctatgtatacagagtctctgctttcactccctggtga 105  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  11023982 gctatgtatacagagtccctgctttcactccccggtga 11023945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 141
Target Start/End: Original strand, 29350996 - 29351080
Alignment:
Q  57 gatcccaagtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    ||||| ||||||  ||||| | ||||||| ||||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||    
T  29350996 gatccgaagtggtcatgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgactcaaacaagaa 29351080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 29351122 - 29351166
Alignment:
Q  188 aattatattgtattatgtactgttggatggctgcatttgtagggt 232  Q
    ||||||||||||||||| ||| |||| ||| ||||||||||||||    
T  29351122 aattatattgtattatgaactcttgggtggttgcatttgtagggt 29351166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24340994 - 24341069
Alignment:
Q  66 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24341069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24353359 - 24353434
Alignment:
Q  66 tggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaagaa 141  Q
    ||||||||||||| |||||| |||||||||||||| |||| |||||| | |||||||| || | | ||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatggcacaaacaagaa 24353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 21016402 - 21016476
Alignment:
Q  64 agtggctatgtatacagagtctctgctttcactccctggtgataatgagcaggcttaagaggacgacgcaaacaa 138  Q
    ||||||| |||||||||||||| ||||||||||||||| ||| || || || | |||||| || ||| |||||||    
T  21016402 agtggctgtgtatacagagtctttgctttcactccctgatgacaacgaccaagattaagaagatgacacaaacaa 21016476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 30119743 - 30119715
Alignment:
Q  72 tgtatacagagtctctgctttcactccct 100  Q
    |||||||||||||||||||||||||||||    
T  30119743 tgtatacagagtctctgctttcactccct 30119715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University