View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_13 (Length: 364)
Name: NF14191_low_13
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 52140461 - 52140134
Alignment:
| Q |
19 |
caatatccatagaagaagaaccaaaacggtgcaatgtttacgaagctgtgagctcatagatttccatcaacaatttatcccttacgaagtggcatggtct |
118 |
Q |
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| T |
52140461 |
caatatccatagaagaagaaccaaaacggtgcaatgtttacgaagctgtgagctcatagatttccatcaacaatttatcccttacgaagtggcatggtct |
52140362 |
T |
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| Q |
119 |
ttacaaaaagacattgtcaaacaaaagaaatcacagattcaaaatgaaggagattgcaacgacactcttattgttttgcaacacccttctgtttttacat |
218 |
Q |
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| T |
52140361 |
ttacaaaaagacattgtcaaacaaaagaaatcacagattcaaaatgaaggagattgcaacgacactcttattgttttgcaacacccttctgtttttacat |
52140262 |
T |
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| Q |
219 |
tgggtactgctagttccaacgacaacctcaatttcgacattcaaaatccaccctttcatattcatcgtactgaacgtggcggagaagttacatatcatgg |
318 |
Q |
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| T |
52140261 |
tgggtactgctagttccaacgacaacctcaatttcgacattcaaaatccaccctttcatattcatcgtactgaacgtggcggagaagttacatatcatgg |
52140162 |
T |
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| Q |
319 |
tcctggccaggtttatttcttgctatct |
346 |
Q |
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| T |
52140161 |
tcctggccaggtttatttcttgttatct |
52140134 |
T |
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