View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_low_16 (Length: 310)

Name: NF14191_low_16
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_low_16
NF14191_low_16
[»] chr7 (3 HSPs)
chr7 (91-295)||(5213890-5214094)
chr7 (1-38)||(5214151-5214188)
chr7 (104-156)||(8308989-8309041)
[»] chr3 (1 HSPs)
chr3 (95-156)||(26297843-26297904)
[»] chr1 (3 HSPs)
chr1 (194-251)||(15850883-15850940)
chr1 (91-168)||(1173996-1174075)
chr1 (200-255)||(34935186-34935241)
[»] chr2 (2 HSPs)
chr2 (169-237)||(20977016-20977084)
chr2 (186-245)||(39526853-39526912)
[»] chr4 (3 HSPs)
chr4 (196-255)||(32021998-32022056)
chr4 (109-154)||(13275704-13275749)
chr4 (204-240)||(24042265-24042301)
[»] chr6 (2 HSPs)
chr6 (195-245)||(30831126-30831176)
chr6 (127-167)||(1462370-1462410)
[»] scaffold0400 (1 HSPs)
scaffold0400 (168-221)||(3349-3401)
[»] scaffold0365 (1 HSPs)
scaffold0365 (168-221)||(3993-4045)
[»] chr5 (4 HSPs)
chr5 (201-241)||(17044328-17044368)
chr5 (192-255)||(17695313-17695377)
chr5 (95-156)||(20694734-20694797)
chr5 (186-230)||(24248376-24248420)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 91 - 295
Target Start/End: Complemental strand, 5214094 - 5213890
Alignment:
Q  91 cagacaactccatatgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatctgatgtaagttaaagaatgaagatttacgaaggt 190  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5214094 cagacaactccatatgtgttgagtctttttattgataaatcatgtaattcagcaaaacaatatatctgatgtaagttaaagaatgaagatttacgaaggt 5213995  T
Q  191 tttagaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaaggaagaagagcattcaaagaacgaatgaaaaactac 290  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5213994 tttagaagcttttgaagacaatacaagttggagaaattttgtctcaagtcttaaggcatttcaaggaagaagagcattcaaagaacgaatgaaaaactac 5213895  T
Q  291 aaaat 295  Q
    |||||    
T  5213894 aaaat 5213890  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5214188 - 5214151
Alignment:
Q  1 taggggagttgcagatgagttgttcatggtttgaggga 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  5214188 taggggagtttcagatgagttgttcatggtttgaggga 5214151  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 8309041 - 8308989
Alignment:
Q  104 atgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatc 156  Q
    |||| ||||||||||||| ||| ||||||||||| |||||||||||| |||||    
T  8309041 atgttttgagtctttttagtaagaaatcatgtaaatcagcaaaacaagacatc 8308989  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 26297843 - 26297904
Alignment:
Q  95 caactccatatgtgttgagtctttttattaataaatcatgtaattcagcaaaacaatacatc 156  Q
    ||||| |||||||||||||||| |||| | ||||||||||||| || ||||||||| |||||    
T  26297843 caacttcatatgtgttgagtctatttagtgataaatcatgtaaatcggcaaaacaagacatc 26297904  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 15850940 - 15850883
Alignment:
Q  194 agaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcattt 251  Q
    |||||||||||||||||||||||||| |||||| || ||||||| | | |||||||||    
T  15850940 agaaggttttgaagacaatacaagtttgagaaaattcatcccaaatttcaaggcattt 15850883  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 1173996 - 1174075
Alignment:
Q  91 cagacaactccatatgtg--ttgagtctttttattaataaatcatgtaattcagcaaaacaatacatctgatgtaagtta 168  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||| ||| ||||| ||| | |||| ||| ||||||    
T  1173996 cagacaacttcataggtgctttgagtctttttattaataaatcatgtacttcggcaaagcaaaatatctcatggaagtta 1174075  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 200 - 255
Target Start/End: Complemental strand, 34935241 - 34935186
Alignment:
Q  200 ttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 255  Q
    ||||||||| |||||||||||| |||| || |||||||||  ||||||||||||||    
T  34935241 ttttgaagataatacaagttggggaaaattcatcccaagttctaaggcatttcaag 34935186  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 20977016 - 20977084
Alignment:
Q  169 aagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttggagaaattttatcccaa 237  Q
    ||||||||||||  || ||| ||||||||||| ||||| ||||||||| |||| |||||||| ||||||    
T  20977016 aagaatgaagatcgacaaagcttttagaaggtgttgaatacaatacaatttggggaaattttgtcccaa 20977084  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 39526912 - 39526853
Alignment:
Q  186 aaggttttagaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaag 245  Q
    |||||||||||||| |||||||||| | ||||||||||||||| | || |||||| ||||    
T  39526912 aaggttttagaaggctttgaagacattgcaagttggagaaattatgtctcaagtcctaag 39526853  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 32021998 - 32022056
Alignment:
Q  196 aaggttttgaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 255  Q
    |||||||||||||||||||||||||| |||| || ||||||| | | |||||||||||||    
T  32021998 aaggttttgaagacaatacaagttggggaaa-ttcatcccaaatttcaaggcatttcaag 32022056  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 13275749 - 13275704
Alignment:
Q  109 ttgagtctttttattaataaatcatgtaattcagcaaaacaataca 154  Q
    |||||||||||||||  ||||||||||||||| ||||| |||||||    
T  13275749 ttgagtctttttattgctaaatcatgtaattcggcaaagcaataca 13275704  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 24042301 - 24042265
Alignment:
Q  204 gaagacaatacaagttggagaaattttatcccaagtc 240  Q
    |||||||||||||||| | ||||||||||||||||||    
T  24042301 gaagacaatacaagttagggaaattttatcccaagtc 24042265  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 30831176 - 30831126
Alignment:
Q  195 gaaggttttgaagacaatacaagttggagaaattttatcccaagtcttaag 245  Q
    ||||||||||||||||| |||||||| |||||| || ||||||||| ||||    
T  30831176 gaaggttttgaagacaaaacaagttgaagaaatgttgtcccaagtcctaag 30831126  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 1462370 - 1462410
Alignment:
Q  127 aaatcatgtaattcagcaaaacaatacatctgatgtaagtt 167  Q
    |||||||||||||||||||||||||||| || ||| |||||    
T  1462370 aaatcatgtaattcagcaaaacaatacaacttatggaagtt 1462410  T

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Target: scaffold0400 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 3401 - 3349
Alignment:
Q  168 aaagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttgg 221  Q
    |||||||||||||  |||| |||||| ||||| |||||||||||||||||||||    
T  3401 aaagaatgaagatcaacga-ggttttggaaggctttgaagacaatacaagttgg 3349  T

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Target: scaffold0365 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 4045 - 3993
Alignment:
Q  168 aaagaatgaagatttacgaaggttttagaaggttttgaagacaatacaagttgg 221  Q
    |||||||||||||  |||| |||||| ||||| |||||||||||||||||||||    
T  4045 aaagaatgaagatcaacga-ggttttggaaggctttgaagacaatacaagttgg 3993  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 241
Target Start/End: Complemental strand, 17044368 - 17044328
Alignment:
Q  201 tttgaagacaatacaagttggagaaattttatcccaagtct 241  Q
    |||||||||| ||||||||||||||||||| | ||||||||    
T  17044368 tttgaagacattacaagttggagaaattttgttccaagtct 17044328  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 17695377 - 17695313
Alignment:
Q  192 ttagaaggtttt-gaagacaatacaagttggagaaattttatcccaagtcttaaggcatttcaag 255  Q
    |||||||||||| |||||||||||||||||| |||| || |||| ||||   |||||||||||||    
T  17695377 ttagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaag 17695313  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 20694734 - 20694797
Alignment:
Q  95 caactccatatgtgtt--gagtctttttattaataaatcatgtaattcagcaaaacaatacatc 156  Q
    ||||| ||||||||||  ||||||||||| ||| ||||||||||| || ||||||||| |||||    
T  20694734 caactgcatatgtgttttgagtctttttagtaagaaatcatgtaaatcggcaaaacaagacatc 20694797  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 24248420 - 24248376
Alignment:
Q  186 aaggttttagaaggttttgaagacaatacaagttggagaaatttt 230  Q
    |||||| || |||| |||||||||| |||||||||||||||||||    
T  24248420 aaggttctataagggtttgaagacattacaagttggagaaatttt 24248376  T

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