View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_17 (Length: 300)
Name: NF14191_low_17
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 38867581 - 38867864
Alignment:
| Q |
8 |
tcgaagaatatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtctatt-cagaagaatgaaactaaatagtaaatagtagttgaataaa |
106 |
Q |
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| T |
38867581 |
tcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatttcagaagaatgaaactaaatagtaaatagtagttgaataaa |
38867680 |
T |
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| Q |
107 |
atacatacagtttgagaagttcatgcttcaaaagaatgaaacagcnnnnnnnnnn--------catcaaataacactcattcaacccctttcaatctaga |
198 |
Q |
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| T |
38867681 |
atacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaaaaacatcaaataacactcattcaacccctttcaatctaga |
38867780 |
T |
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| Q |
199 |
aatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaacc |
282 |
Q |
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| T |
38867781 |
aatatggagtatcattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattgagccactgtgaaacc |
38867864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 168 - 274
Target Start/End: Original strand, 38598698 - 38598804
Alignment:
| Q |
168 |
ataacactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaattacaattggcaaaaggaaagaatagcactattg |
267 |
Q |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattatttcacttttcagttctttaatgacaattggcaaaagaaaagtatagcactattg |
38598797 |
T |
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| Q |
268 |
agccact |
274 |
Q |
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| T |
38598798 |
agtcact |
38598804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 39953790 - 39953726
Alignment:
| Q |
171 |
acactcattcaacccctttcaatctagaaatatggagtattattttacttttcagttttttaatt |
235 |
Q |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattatttcacttttcagttctttaatt |
39953726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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