View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_18 (Length: 293)
Name: NF14191_low_18
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_18 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 75 - 278
Target Start/End: Original strand, 31966203 - 31966406
Alignment:
| Q |
75 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31966203 |
tattgtgatgtccgcattgtgtatgttttatttgtactttgtatttggtctatgcaacactagccaatttatgttttatcttctttgatttattatttct |
31966302 |
T |
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| Q |
175 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtcaac |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31966303 |
aatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattggatcaac |
31966402 |
T |
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| Q |
275 |
tata |
278 |
Q |
| |
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|||| |
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| T |
31966403 |
tata |
31966406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 140 - 280
Target Start/End: Original strand, 31959281 - 31959418
Alignment:
| Q |
140 |
aatttatgttttatcttctttgatttattatttctaatatcattgtttgtgttttctaaatgtatgacagatatgcaatagctactgggaaatcatacag |
239 |
Q |
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||||||||||||||||| |||||| | |||| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31959281 |
aatttatgttttatctt---tgatttttcatttttaatctcactgtttgtattttcttaatgtatgacagatatgcaatagctactgggaaatcatacag |
31959377 |
T |
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| Q |
240 |
ctatatacttcaatttgccgtttcattgggtcaactatatg |
280 |
Q |
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| T |
31959378 |
ctacatccttcaatttgccgtttcattgggtcagctatatg |
31959418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 20981811 - 20981688
Alignment:
| Q |
150 |
ttatcttctttgatttattatttctaatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatact |
248 |
Q |
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||||||||||||| |||| |||| |||| ||| ||||||||||||||| ||| |||||| |||||||||||||||| |||||||||| || || ||||| |
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| T |
20981811 |
ttatcttctttgaattatcatttttaatctcacagtttgtgttttctaatatggatgacaaatatgcaatagctactaggaaatcatagagttacatact |
20981712 |
T |
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| Q |
249 |
tcaatttgccgtttcattgggtca |
272 |
Q |
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|||| ||||| |||| |||||||| |
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| T |
20981711 |
tcaacttgccatttctttgggtca |
20981688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 20971348 - 20971281
Alignment:
| Q |
203 |
atgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
270 |
Q |
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|||||| |||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||| |
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| T |
20971348 |
atgacaaatatgcaatagctactaggaaatcatacatatacatacttcaatttgccgtttctttgggt |
20971281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 20973566 - 20973509
Alignment:
| Q |
215 |
caatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggtca |
272 |
Q |
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| T |
20973566 |
caatagctactaggaaatcatacagctacatacttcaatttgttgtttctttgggtca |
20973509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 30371 - 30457
Alignment:
| Q |
185 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
270 |
Q |
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||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
30371 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
30457 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 41403964 - 41403878
Alignment:
| Q |
185 |
tttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
270 |
Q |
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||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41403964 |
tttgttttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
41403878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 7215 - 7135
Alignment:
| Q |
191 |
ttttctaa-atgtatgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgggt |
270 |
Q |
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|||||||| ||| |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
7215 |
ttttctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggt |
7135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 13445768 - 13445892
Alignment:
| Q |
140 |
aatttatgttttatcttctttgatttattatttc-----taatatcattgtttgtgttttctaa-atgtatgacagatatgcaatagctactgggaaatc |
233 |
Q |
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|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||||||| || || || |||||||||| ||| |||| | |||||| |
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| T |
13445768 |
aatttatgttttatctacttttatttattctttcatttttaatctcattgtttgtgttttcaaatataaataacagatatgcgataactaccgtgaaatc |
13445867 |
T |
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| Q |
234 |
atacagctatatacttcaatttgcc |
258 |
Q |
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||||||||| ||||||||||||||| |
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| T |
13445868 |
atacagctacatacttcaatttgcc |
13445892 |
T |
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