View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14191_low_19 (Length: 286)
Name: NF14191_low_19
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 1869800 - 1869532
Alignment:
| Q |
1 |
gcaacaaaaggaccaaagtgaatgcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtact |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1869800 |
gcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtgataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtact |
1869701 |
T |
|
| Q |
101 |
tgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869700 |
tgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaa |
1869601 |
T |
|
| Q |
201 |
tttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgctctaaaagagtctcatttt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869600 |
tttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgctctaaaagagtctcatttt |
1869532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 230
Target Start/End: Complemental strand, 1916910 - 1916736
Alignment:
| Q |
56 |
tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccac |
155 |
Q |
| |
|
||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || |
|
|
| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac |
1916811 |
T |
|
| Q |
156 |
cttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
230 |
Q |
| |
|
|||| || ||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
1916810 |
cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatc |
1916736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 17488645 - 17488418
Alignment:
| Q |
3 |
aacaaaaggaccaaagtgaatgcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttg |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
17488645 |
aacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgataatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttg |
17488546 |
T |
|
| Q |
103 |
tcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||| | || |
|
|
| T |
17488545 |
tcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattt |
17488446 |
T |
|
| Q |
203 |
tggaaaatccatccttgacatcaccatc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17488445 |
tggaaaatccatccttgacatcaccatc |
17488418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 17564569 - 17564796
Alignment:
| Q |
3 |
aacaaaaggaccaaagtgaatgcagatgagtacaattgtggaacaagtgataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttg |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
17564569 |
aacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgataatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttg |
17564668 |
T |
|
| Q |
103 |
tcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatt |
202 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||| | || |
|
|
| T |
17564669 |
tcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacctgccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattt |
17564768 |
T |
|
| Q |
203 |
tggaaaatccatccttgacatcaccatc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17564769 |
tggaaaatccatccttgacatcaccatc |
17564796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University