View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_24 (Length: 253)
Name: NF14191_low_24
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 9516179 - 9516380
Alignment:
| Q |
21 |
atcacaatattttaggataaagaatcttgatcttctttaaaacgttttacatgttctcttaatggtttctacaattattctttaaattttttattctatt |
120 |
Q |
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| T |
9516179 |
atcacaatattttaggataaagaatcttgatcttcgataaaacgttttacatgttctcttaaaggtttctacaattattctttaaattttttattctatt |
9516278 |
T |
|
| Q |
121 |
tttcacgtctttcccttaacacacacatgtaatccaactcttcgaggaattgtctagcactgaaataaatgtgctcatttctcaacatatatttgaccta |
220 |
Q |
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| T |
9516279 |
tttcacgtctttcccttaacacacacatgtaatccaactcttcgaggaattgtctagcactgaactaaatgtgctcatttctcaacatatatttgaccta |
9516378 |
T |
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| Q |
221 |
tg |
222 |
Q |
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|| |
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| T |
9516379 |
tg |
9516380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 222
Target Start/End: Complemental strand, 40819332 - 40819208
Alignment:
| Q |
98 |
ttctttaaattttttattctatttttcacgtctttcccttaacacacacatgtaatccaactcttcgaggaattgtctagcactgaaataaatgtgctca |
197 |
Q |
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| T |
40819332 |
ttctttaaattttttattctatttttcacgtctttccctgaacacacacatgtaatccaactcttcgagaaattgtctagcactaaactaaatatgctcc |
40819233 |
T |
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| Q |
198 |
tttctcaacatatatttgacctatg |
222 |
Q |
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| T |
40819232 |
tttcttaacatatatttgaactatg |
40819208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 40819364 - 40819324
Alignment:
| Q |
21 |
atcacaatattttaggataaagaatcttgatcttctttaaa |
61 |
Q |
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||||||| |||||||||| |||||||||||||||||||||| |
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| T |
40819364 |
atcacaagattttaggattaagaatcttgatcttctttaaa |
40819324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 5121270 - 5121213
Alignment:
| Q |
105 |
aattttttattctatttttcacgtctttcccttaacacacacatgtaatccaactctt |
162 |
Q |
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|||||||||||||||||||||| |||||| |||||| ||||||||||||| ||||||| |
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| T |
5121270 |
aattttttattctatttttcacatctttcacttaacccacacatgtaatcaaactctt |
5121213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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