View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_25 (Length: 250)
Name: NF14191_low_25
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 33538793 - 33538577
Alignment:
| Q |
19 |
ccatgaattagttaaggcgaccaaattatcggttagttttcaaatcttggttaacatacaaaattgtatcgaatatattttaaataatgatataatttaa |
118 |
Q |
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| T |
33538793 |
ccatgaattagttaaggcgaccaaattatcggttagttttcaaatcttggttaacatacaaaattgtattgaatatattttaaataatgatataatttaa |
33538694 |
T |
|
| Q |
119 |
gtccttttccttaatagaaaaagttataatctctaacttctaaaataattttgacaactattagactttgaatcagattttactgaactaaaagactccc |
218 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
33538693 |
gtccttttccttaat--aaaaagttataatctctaacttctaaaataattttgacaactattacactttgaatcagattttattgaactaaaagactccc |
33538596 |
T |
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| Q |
219 |
tcaccatcttcaatagttc |
237 |
Q |
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||||||||||||||||||| |
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| T |
33538595 |
tcaccatcttcaatagttc |
33538577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 33535519 - 33535320
Alignment:
| Q |
19 |
ccatgaattagttaaggcgaccaaattatcggttagttttcaaatcttggttaacatacaaaattgtatcgaatatattttaaataatgatataatttaa |
118 |
Q |
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||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |
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| T |
33535519 |
ccatgaattagttaaggcggctaaattatcggttagttttccaatcttggttaacatacaaaattatattgaatacattttaa----------------- |
33535437 |
T |
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| Q |
119 |
gtccttttccttaatagaaaaagttataatctctaacttctaaaataattttgacaactattagactttgaatcagattttactgaactaaaagactccc |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
33535436 |
gtccttttccttaata--aaaagttataatctctaacttctcaaataattttgacaactattacactttgaatcagattttactgaactaatagactccc |
33535339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 21485620 - 21485503
Alignment:
| Q |
15 |
ttgtccatgaattagttaaggcgaccaaattatcggttagttttcaaatcttggttaacatacaaaattgtatcgaatatattttaaataatgatataat |
114 |
Q |
| |
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||||||||||||||| ||||||| || |||||| | |||||||| ||| ||| || |||||| ||||||||| ||| ||||||||| ||||||||||| |
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| T |
21485620 |
ttgtccatgaattagctaaggcggtcacattatcagctagttttcgaattttgattgacataccaaattgtattgaacatattttaagtaatgatataag |
21485521 |
T |
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| Q |
115 |
ttaagtccttttccttaa |
132 |
Q |
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|||||||||||||||||| |
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| T |
21485520 |
ttaagtccttttccttaa |
21485503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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