View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_26 (Length: 250)
Name: NF14191_low_26
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3527599 - 3527365
Alignment:
| Q |
1 |
ctcgttgtctcattaattataacaaaatgaatagtggcaaaatgtgtacacgggtgatgctgatttgggtgttaatggtagtaattagcatgagtgtaat |
100 |
Q |
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| T |
3527599 |
ctcgttgtctcattaattataacaaaatgaataatggcaaaatgtgtacacgggtgatgctgatttgggtgttaatggtagtaattagcatgagtgtaat |
3527500 |
T |
|
| Q |
101 |
cagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacgttaactctacacaaccaccagacatttgctgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3527499 |
tagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacattaactctacacaaccaccagacatttgctgc |
3527400 |
T |
|
| Q |
201 |
aatccaattaaagatctatatgcaacccacaaaac |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3527399 |
aatccaattaaagatctatatgcaacccacaaaac |
3527365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 214
Target Start/End: Complemental strand, 3537114 - 3536979
Alignment:
| Q |
79 |
tagtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccaccttgtgctgatcagatactattaccatgcattgactacgttaactctac |
178 |
Q |
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||||||||| ||| | |||||| ||| |||||||||||||| |||||||||||||||||| | | | | || ||||||| |||||| | || || || |
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| T |
3537114 |
tagtaattaacataaatgtaattagcatagtagatgcacaaatgcttccaccttgtgctggtgataagatgttgccatgcacagactacctcaattccac |
3537015 |
T |
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| Q |
179 |
acaaccaccagacatttgctgcaatccaattaaaga |
214 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
3537014 |
tcatccaccagacatttgctgcaatccaattaaaga |
3536979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 3531929 - 3531880
Alignment:
| Q |
81 |
gtaattagcatgagtgtaatcagcttagtagatgcacaagtgcttccacc |
130 |
Q |
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||||||||||||||||| || ||| || ||||||||||||| |||||||| |
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| T |
3531929 |
gtaattagcatgagtgtgattagcatattagatgcacaagttcttccacc |
3531880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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