View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14191_low_3 (Length: 492)
Name: NF14191_low_3
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 35 - 478
Target Start/End: Complemental strand, 35419163 - 35418692
Alignment:
| Q |
35 |
agtaaattagctactgcgcacagaattgtttctctgtcgtctcaagagtaatatattctgtttagatgatgacagtactatagtaggatcaatgttggta |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35419163 |
agtaaattagctactgcgcacagaattttttctctgtcgtctcaagtgtaatatattctgtttagatgatgacagtactatagtaggatcaatgttggta |
35419064 |
T |
|
| Q |
135 |
tcaaaagatatccgacaaaataaatggatggggtgctgtaaaaataaatatataaataaatggacgtggagcaggtaatttgtg---------------- |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35419063 |
tcaaaagatatccgactaaataaatggatggggtgctgtaaaaataaatatataaataaatggacgtgaagcaggtaatttgtggatcttatatgaggta |
35418964 |
T |
|
| Q |
219 |
------ttcgatactgtaataaaatgtacaagtaaattaatgatagctctaagttagataaaaaattgttaatactgttaaattttccccaattttgtct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35418963 |
aataggttcgatactgtaataaaatgtacaagtaaattaatgatagctctaagttagataaaaaattgttaatactgttaaattttccccaattttgtct |
35418864 |
T |
|
| Q |
313 |
tgtcatgtatggagctatgata--gattagcagttaggttaaggtgacaccatatttttggaacttactgcagtttctgcattcatta--ggtgaag-ac |
407 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
|
|
| T |
35418863 |
tgtcatgtatggagctatgatagtgattagcagttaggttaaggtgacaccatatttttggaacttactgcagtttctgcattcattaaggttgaagaac |
35418764 |
T |
|
| Q |
408 |
ttttccagatgttacaccttacagttgaataattgatg-aatatttttccttttccttgttgctgcatattg |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35418763 |
ttttccagatgttacaccttacagttgaataattgatgaaatatttttccttttccttgttgctgcatattg |
35418692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University