View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_30 (Length: 236)
Name: NF14191_low_30
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 38933916 - 38934088
Alignment:
| Q |
55 |
atgcttgccatgaaactatgcattgttttttaacctattgcaatgtttatgtgttggcaattgctttgacattttagcttaaacatgttccgtttaagaa |
154 |
Q |
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| T |
38933916 |
atgcttgccatgaaactatgcattgttt---aacctattgcaatgtttatgtgttggcaattgctttgaccttttagcttaaacatgttccatttaagaa |
38934012 |
T |
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| Q |
155 |
ttcatggtggcttattttcctatacttgcttttagcttaagtgttgtatgcatttttgttttatgatgatgatgtc |
230 |
Q |
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| T |
38934013 |
ttcatggtggcttattttcctatacttgcttttagcttaagtgttatatgcatttttgttttatgatgatgatgtc |
38934088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 38933842 - 38933887
Alignment:
| Q |
8 |
ggagaaagagggactaacttgataactctcttgtcaaatatgaagt |
53 |
Q |
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| T |
38933842 |
ggagaaagagggactaacttgataactctcttgtcaaatatgaagt |
38933887 |
T |
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