View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14191_low_4 (Length: 459)

Name: NF14191_low_4
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14191_low_4
NF14191_low_4
[»] chr3 (4 HSPs)
chr3 (230-440)||(6078915-6079126)
chr3 (3-165)||(6079191-6079352)
chr3 (278-416)||(11028878-11029016)
chr3 (14-91)||(11028675-11028752)
[»] chr6 (5 HSPs)
chr6 (232-370)||(13549165-13549307)
chr6 (3-100)||(19215354-19215449)
chr6 (297-440)||(7457785-7457928)
chr6 (241-440)||(31876072-31876270)
chr6 (3-70)||(13548896-13548963)
[»] scaffold0017 (3 HSPs)
scaffold0017 (241-440)||(39421-39611)
scaffold0017 (12-95)||(39144-39228)
scaffold0017 (126-165)||(39286-39325)
[»] chr8 (1 HSPs)
chr8 (240-350)||(21350191-21350301)
[»] chr1 (1 HSPs)
chr1 (12-73)||(19190469-19190530)
[»] chr2 (1 HSPs)
chr2 (12-95)||(13652915-13652999)
[»] chr4 (1 HSPs)
chr4 (241-356)||(51030972-51031086)
[»] chr7 (1 HSPs)
chr7 (240-356)||(26645270-26645384)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 230 - 440
Target Start/End: Complemental strand, 6079126 - 6078915
Alignment:
Q  230 tgtaaacaaacctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatg--aggatttgcatttgggccagggtgaaagg 327  Q
    ||||||||| ||||||||||||||||||||||||||| |   |||||||||||||||||||||| ||||  ||||||||||||| |||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcctccaaccttcatcattttgtgcaagtgctatgtgaggatttgcatttaggccagggtgaaagg 6079027  T
Q  328 gttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaa 427  Q
    |||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  6079026 gttacctcgatggctccctattttccttaaatattagtttgtcccttctctttctctac-cttgtctttcatctcacattgaaccgatgttgatagaaaa 6078928  T
Q  428 caaatagtaaatg 440  Q
    |||||||||||||    
T  6078927 caaatagtaaatg 6078915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 6079352 - 6079191
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnn 102  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  6079352 tgggtaaagtatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag-a 6079254  T
Q  103 nnnnnnnnccaaattattttctttgttcatcatctctatttacatcagactttcattttctac 165  Q
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079253 aaaaaaaaccaaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 278 - 416
Target Start/End: Original strand, 11028878 - 11029016
Alignment:
Q  278 tcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctc 377  Q
    ||||| ||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||| | ||||| ||||||| ||||  || ||    
T  11028878 tcattatgtgcgagtgctatgaggatttgcatttaggccacggtgaaagggttacctcgatgactccctattctccttaattattagtgtgtctcttgtc 11028977  T
Q  378 tttctctactcttgtctttcatctcacattgaaccgatg 416  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  11028978 ttcctctactcttgtcttccatctcacattgaaccgatg 11029016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  14 tacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 91  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 232 - 370
Target Start/End: Original strand, 13549165 - 13549307
Alignment:
Q  232 taaacaaacctctctctctccaaaaaccttatgccccatt-ccttcatcattttgtgcaagt---gttatgaggatttgcatttgggccagggtgaaagg 327  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||   ||| ||||||||| ||||| ||||| ||| |||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgccccctttccttcatcatttcgtgcgagtcatgttgtgaggatttacatttaggccacggtcaaagg 13549264  T
Q  328 gttacctcaatggctccctatttttcttaaatattagtttgtc 370  Q
    || ||||| ||||||||||||||| |||| |||||| ||||||    
T  13549265 gtgacctcgatggctccctattttccttagatattattttgtc 13549307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 19215354 - 19215449
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 100  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215354 tgggtaaagtatacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 7457785 - 7457928
Alignment:
Q  297 tgaggatttgcatttgggccagggtgaaagggttacctcaatggctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtcttt 396  Q
    |||| |||||||||| | |||  || ||||||| ||||  ||||||||||||||| |||| |||||| ||| ||  | | |||||| |||||||||| |     
T  7457785 tgagcatttgcatttagtccactgtcaaagggtgacctagatggctccctattttccttacatattattttatctctcccctttctatactcttgtcctc 7457884  T
Q  397 catctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 440  Q
     |||||||||||||| ||  ||||||||||| ||||||||||||    
T  7457885 tatctcacattgaacagagtttgatcgaaaataaatagtaaatg 7457928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 440
Target Start/End: Complemental strand, 31876270 - 31876072
Alignment:
Q  241 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 340  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||  |||||| |||| |||||||||| | ||   |  ||| |||  |||  ||||    
T  31876270 ctctctctctccaaaaatcttatgcccc-ttcctctatcattttgtgtgagtgttgtgagcatttgcatttagacccctgccaaatggtggcctagatgg 31876172  T
Q  341 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 440  Q
    ||||||||||| |||| |||||| ||| ||  | | ||| || |||||||||| |  |||||||||||||| ||  ||||||||| | ||||||||||||    
T  31876171 ctccctattttccttacatattattttatctctccccttcctatactcttgtcctctatctcacattgaacagagtttgatcgaatataaatagtaaatg 31876072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 13548896 - 13548963
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaa 70  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548896 tgggtaaagtatacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 440
Target Start/End: Original strand, 39421 - 39611
Alignment:
Q  241 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 340  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||    |||      ||||| |||||| ||||| ||| ||||||| ||||  ||||    
T  39421 ctctctctctccaaaaaccttatgccctcttccttcatcatttcgtc---gtg------ggattcgcatttaggccatggtcaaagggtgacctagatgg 39511  T
Q  341 ctccctatttttcttaaatattagtttgtcctttctctttctctactcttgtctttcatctcacattgaaccgatgttgatcgaaaacaaatagtaaatg 440  Q
     ||||||||||||||| |||||| ||||||  ||||||| ||||||| ||||| | |||||||||||||| ||  | |||||||||||||||||||||||    
T  39512 ttccctatttttcttagatattattttgtctattctcttcctctacttttgtcctccatctcacattgaatcggagctgatcgaaaacaaatagtaaatg 39611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 39144 - 39228
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39144 tatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  126 tgttcatcatctctatttacatcagactttcattttctac 165  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 350
Target Start/End: Original strand, 21350191 - 21350301
Alignment:
Q  240 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 339  Q
    |||| ||| |||||||||||||||||||| |||||  |||||||||||| |||| ||||| ||||||||||| ||| |  || ||||||| ||||| |||    
T  21350191 cctccctccctccaaaaaccttatgcccccttcctctatcattttgtgcgagtgctatgaagatttgcatttaggctatagtcaaagggtgacctcgatg 21350290  T
Q  340 gctccctattt 350  Q
    || ||||||||    
T  21350291 gcaccctattt 21350301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 19190530 - 19190469
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 73  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190530 tatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 13652915 - 13652999
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652915 tatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 51030972 - 51031086
Alignment:
Q  241 ctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatgg 340  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||||||||| |||||  |  ||||||| || |  ||||    
T  51030972 ctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgatgtgaggatttgcatttaggccactgccaaagggtgacatagatgg 51031070  T
Q  341 ctccctatttttctta 356  Q
    ||||||||||| ||||    
T  51031071 ctccctattttcctta 51031086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 356
Target Start/End: Complemental strand, 26645384 - 26645270
Alignment:
Q  240 cctctctctctccaaaaaccttatgccccattccttcatcattttgtgcaagtgttatgaggatttgcatttgggccagggtgaaagggttacctcaatg 339  Q
    ||||||||||||||||||||| ||||||| ||||| | ||||||||||  |||| | ||||||||| ||||| |||||  |  ||||||| ||||  |||    
T  26645384 cctctctctctccaaaaacctaatgcccc-ttcctccgtcattttgtgtgagtgctgtgaggattt-catttaggccactgccaaagggtgacctagatg 26645287  T
Q  340 gctccctatttttctta 356  Q
    |||||||||||| ||||    
T  26645286 gctccctattttcctta 26645270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University