View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_6 (Length: 444)
Name: NF14191_low_6
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 7 - 436
Target Start/End: Original strand, 31628938 - 31629367
Alignment:
| Q |
7 |
gctcattctcattctcttaactctccgtatcccgaaaatcaaccatatcaactccatttctcataatgctctcaggtttgatttcagttcaactcaactt |
106 |
Q |
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| T |
31628938 |
gctcattctcattctcttaactctccgtatcccgaaactcaaccatatcaactccatttctcataatgctctcaggtttgatttcagttcaactcaactt |
31629037 |
T |
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| Q |
107 |
tctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaagacaatgacaataagcgttgggttcaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629038 |
tctttgtgttattctattctctctttatgattgattgcatctctttctcatctatattctatgcagaagtgaagacaatgacaataagcgttgggttcaa |
31629137 |
T |
|
| Q |
207 |
atcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttgcttcctttcttactttttatgataagaattatttgttaatgatct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629138 |
atcgtatcgtgggagcctagagcatttttatatcataattttctggtcagttttgtttcctttcttactttttatgataagaattatttgttaatgatct |
31629237 |
T |
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| Q |
307 |
aattatcaaatcacgtaattggaatcaaaatgacatgtgttacggacatttcttgttgaaagagtgtccggtgtcctgcatgtgtcaagagtccaaaata |
406 |
Q |
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| T |
31629238 |
aattatcaaattacgtaattggaatcaaaatgacatgtgttacggacatttcttgttgaaagagtgtccggtgtccttcatgtgtcaagagtccaaaata |
31629337 |
T |
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| Q |
407 |
gacaccacatcatcactactaatattcttc |
436 |
Q |
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| T |
31629338 |
gacaccacatcatcactactaattttcttc |
31629367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 258
Target Start/End: Original strand, 31643561 - 31643658
Alignment:
| Q |
161 |
tattctatgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
258 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
31643561 |
tattctatgcagaagtgaagacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagcgtttttatatcataattttctggttagtt |
31643658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 31650740 - 31650828
Alignment:
| Q |
167 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtca |
255 |
Q |
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| T |
31650740 |
atgcagaaatgaagacgatgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttctggtca |
31650828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 31654226 - 31654359
Alignment:
| Q |
184 |
atgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt--ttgcttcctttcttact---ttt |
278 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||||| || ||| |
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| T |
31654226 |
atgacaataagcgttgggttcaaatcatatcgtgggagcctagagcatttttatatcataattttcttgtcagtttcttgtttcccttcttgcttgcttt |
31654325 |
T |
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| Q |
279 |
ta-tgataagaattatttgttaatgatctaatta |
311 |
Q |
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|| ||||||| ||||||||||||||||||||||| |
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| T |
31654326 |
tattgataaggattatttgttaatgatctaatta |
31654359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 167 - 258
Target Start/End: Original strand, 31635593 - 31635684
Alignment:
| Q |
167 |
atgcagaagtgaagacaatgacaataagcgttgggttcaaatcgtatcgtgggagcctagagcatttttatatcataattttctggtcagtt |
258 |
Q |
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||||||| | || ||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
31635593 |
atgcagacgcgatgacgatgacaataagcgttgggttgaaatcgtatcgtgggagcctagagtatttttatatcataattttttggtcagtt |
31635684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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