View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_8 (Length: 430)
Name: NF14191_low_8
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 9234563 - 9234363
Alignment:
| Q |
1 |
catgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatcagatgtccacc |
100 |
Q |
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| T |
9234563 |
catgaaaaactcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcatggaatgaaatttcacatcacatgtccacc |
9234464 |
T |
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| Q |
101 |
attcaacatgtatatatatgctgacatggagcaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaagacttac |
200 |
Q |
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| T |
9234463 |
attcagcatgtatatatatgctgacatggagtaaagttccatacataactgatgtagatagctataccctccatatgaataaccatttccaaagacttac |
9234364 |
T |
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| Q |
201 |
t |
201 |
Q |
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| T |
9234363 |
t |
9234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 262 - 412
Target Start/End: Complemental strand, 9234302 - 9234152
Alignment:
| Q |
262 |
ttttcaacttcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
361 |
Q |
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| T |
9234302 |
ttttcaacctcgacatgcaaaatggtagacccgatcccaacaactagaaccattaatttaatctctctttttcatcaattccattcacacaccctccatt |
9234203 |
T |
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| Q |
362 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttc |
412 |
Q |
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| T |
9234202 |
gttttaagcttcagatttctcaactggaacttcttctgctgctggagcttc |
9234152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 9245993 - 9245933
Alignment:
| Q |
11 |
tcatgtaaccttcccaagaaccatagcaccttatagctgatcacttcaatacacaactcat |
71 |
Q |
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||||| ||||||||||||||||||| |||||||||| |||| |||||||||||| |||||| |
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| T |
9245993 |
tcatggaaccttcccaagaaccatatcaccttatagttgatgacttcaatacacgactcat |
9245933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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