View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14191_low_9 (Length: 424)
Name: NF14191_low_9
Description: NF14191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14191_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Complemental strand, 34034050 - 34033649
Alignment:
| Q |
18 |
tttctttcctatttgcagcttcttctttttccttcctaatgctggccaactcttttcctatctcggacggttccaccggcacgccaactgcccttgcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34034050 |
tttctttcctatttgcagcttcttctttttccttcctaatgctggccaactcttttcctatctcggacggttccaccggcacgccaactgcccttgcaat |
34033951 |
T |
|
| Q |
118 |
ctcctcaagtatgtcatttgcgaaagcctggtcctgtttctgatctcttagtccttggttcaacttgtcaacaatttcaagctgagactgtgaagcctcg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033950 |
ctcctcaagtatgtcatttgcgaaagcctggtcctgtttctgatctcttagtccttggttcaacttgtcaacaatttcaagctgagactgtgaagcctcg |
34033851 |
T |
|
| Q |
218 |
aactcaaccctttgcatctcaccttgtagtctatcaacctgatcagaaattctcgatagcacttcagtatttgcaatagacagtgcagccagagaccttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34033850 |
aactcaaccctttgcatctcaccttgtagtctatcaacctgatcagaaattctcgatagcacttcagtatttgcaatagacagtgcagccagagaccttc |
34033751 |
T |
|
| Q |
318 |
caatatcccttgtaacttgctcaacttcctcgactatggaccggcatttaactagcaagtagaaacggccgcggttcttgtacttctcaaccatattctt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34033750 |
caatatcccttgtaacttgctcaacttcctcgactatggaccggcatttaactagcaagtagaaacggccgcggttcttgtacttctcaaccatattatt |
34033651 |
T |
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| Q |
418 |
cg |
419 |
Q |
| |
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|| |
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| T |
34033650 |
cg |
34033649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 327
Target Start/End: Complemental strand, 15191781 - 15191639
Alignment:
| Q |
185 |
tcaacaatttcaagctgagactgtgaagcctcgaactcaaccctttgcatctcaccttgtagtctatcaacctgatcagaaattctcgatagcacttcag |
284 |
Q |
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||||| || ||||||||||| ||||||||||| || | ||||||||||||| | ||||||| | || |||||||||||| |||| || ||||| | |
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| T |
15191781 |
tcaaccatgtcaagctgagattgtgaagcctcaaaattgaccctttgcatcttgctcagtagtctgttgacttgatcagaaattatcgacagtacttcgg |
15191682 |
T |
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| Q |
285 |
tatttgcaatagacagtgcagccagagaccttccaatatccct |
327 |
Q |
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|||||| | |||||||||| |||||||||||||||||||||| |
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| T |
15191681 |
tatttgtgagagacagtgcaaccagagaccttccaatatccct |
15191639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 15210261 - 15210132
Alignment:
| Q |
197 |
agctgagactgtgaagcctcgaactcaaccctttgcatctcaccttgtagtctatcaacctgatcagaaattctcgatagcacttcagtatttgcaatag |
296 |
Q |
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|||||||| ||||||||||| |||| ||||||||||| |||| || ||||| | || || | ||||||||| ||||| | |||||||||| ||| | |
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| T |
15210261 |
agctgagattgtgaagcctcacactcgaccctttgcatgtcactatgcagtctgttgacttggttagaaattcttgataggagttcagtatttccaagaa |
15210162 |
T |
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| Q |
297 |
acagtgcagccagagaccttccaatatccc |
326 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
15210161 |
acacaacagccagagaccttccaatatccc |
15210132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 15210433 - 15210388
Alignment:
| Q |
18 |
tttctttcctatttgcagcttcttctttttccttcctaatgctggc |
63 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
15210433 |
tttctttcctgtttgcagcttcttctttttcccacctaatgctggc |
15210388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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