View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14192_high_2 (Length: 430)
Name: NF14192_high_2
Description: NF14192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14192_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 32035675 - 32036096
Alignment:
| Q |
16 |
aggcatcatgaaaaaagtggatcaaatggaactatagtggtacactaaaaagattaggggaaagacttcactctaaactaaatggatttattgatttttg |
115 |
Q |
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| T |
32035675 |
aggcatcatgaaaaaagtggatcaaatggaactgtagtggtacactaaaaagattaggggaaagacttcactctaaactaaatggatttattgatttttg |
32035774 |
T |
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| Q |
116 |
gttagaatctaatggaatcgactgatctatgtatctatccctactcggtacttggttattattttttacggccacaaaacacaacatagcaaatcatctc |
215 |
Q |
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| T |
32035775 |
gttagaatctaatggaatcgactgatctatgtatctatccctactcagtacttggttgttattttttacggccacaaaacacaacatagcaaatcatctc |
32035874 |
T |
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| Q |
216 |
taacaggaagtccaaaaaacatgacggtcactatcaactaattgatattaac-------aatcataagtcactaacattcatgctcctacattatgattc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32035875 |
taacaggaagtccaaaaaacatgacggtcactatcaactaattgatattaacaatcataaatcataagtcactaacattcatgctcctacattatgattc |
32035974 |
T |
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| Q |
309 |
ctttcccaaagggtttaccaacacatacattatgccccaacattcagctaagcatgatcattaccatctaataaaatcacaatgttgggttgatcatata |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32035975 |
ttttcccaaagggtttaccaacacatacattatgccccaacattcagctaagcatgatcattaccatctaataaaatcacaatgttaggttgatcatata |
32036074 |
T |
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| Q |
409 |
gatattatgatatttgaatttt |
430 |
Q |
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| T |
32036075 |
gatattatgatatttgaatttt |
32036096 |
T |
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