View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14192_low_3 (Length: 359)
Name: NF14192_low_3
Description: NF14192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14192_low_3 |
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| [»] scaffold1113 (2 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 32684077 - 32684226
Alignment:
| Q |
9 |
atcagagataggggaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatg |
108 |
Q |
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| T |
32684077 |
atcagagatagggaaatttgacatgaaggtgtgtggatatcattgtaagaatctcaaatttggtcgaagataaattgtagacgcatgaatgagccggatg |
32684176 |
T |
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| Q |
109 |
ctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
158 |
Q |
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| T |
32684177 |
ctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
32684226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 216 - 344
Target Start/End: Original strand, 32684284 - 32684412
Alignment:
| Q |
216 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
315 |
Q |
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| T |
32684284 |
cctctaaaccagcagatctggcagctgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaagcacaa |
32684383 |
T |
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| Q |
316 |
gacctcattgcgttatattgtgatagtca |
344 |
Q |
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| T |
32684384 |
gacctcattgcgttatattttgatagtca |
32684412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 32692182 - 32692276
Alignment:
| Q |
216 |
cctctaaaccagcagatctggcagttgaattgtgcgctgaaatccaaggctgaatataaagaggaggttgacaatgaccgtaaagaacttcgaag |
310 |
Q |
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| T |
32692182 |
cctctaaaccagcagatctggcagctgaattgtgtgctgaaatgcaaggttgaatataaagaggaggttgacaatgaccgtaaagaactttgaag |
32692276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 32560082 - 32560013
Alignment:
| Q |
273 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcattgcgttatattgtgatagt |
342 |
Q |
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| T |
32560082 |
aaagaggaggttgacaatgaccgtaaagaacttcgaagcacaagacctcgttgcgttatattgtgatagt |
32560013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 32692090 - 32692124
Alignment:
| Q |
124 |
aggcaagtttttctctaacaataattttgattcta |
158 |
Q |
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| T |
32692090 |
aggcaagtttttctctaacaataattttgattcta |
32692124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 134 - 61
Alignment:
| Q |
85 |
gtagacgcatgaatgagccggatgctgatttagcattcaaggcaagtttttctctaacaataattttgattcta |
158 |
Q |
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| T |
134 |
gtagacgcgtgaatgagccggatgctgatttagcattcgaggcaagtttttctctaacaataattttgattcta |
61 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 1904 - 1872
Alignment:
| Q |
124 |
aggcaagtttttctctaacaataattttgattc |
156 |
Q |
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| T |
1904 |
aggcaagtttttctctaacaatgattttgattc |
1872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 1713 - 1745
Alignment:
| Q |
124 |
aggcaagtttttctctaacaataattttgattc |
156 |
Q |
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| T |
1713 |
aggcaagtttttctctaacaatgattttgattc |
1745 |
T |
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