View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14192_low_5 (Length: 245)
Name: NF14192_low_5
Description: NF14192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14192_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 5582390 - 5582164
Alignment:
| Q |
10 |
attattctattttccgtgttgtggtgttcgtttgatttatattaaaaaatcgactcaattacagattcaattagnnnnnnnnnngtttgtttgaagaata |
109 |
Q |
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| T |
5582390 |
attattttattttccgtgttgcggtgatcgtttagtttatattaaaaaatcgactcatttacagattcaattagctattt-----ttttttttaagaata |
5582296 |
T |
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| Q |
110 |
cagactcaattagttgagattcaacattgatatttatagaa-tatttcaataacattaatgcaaatgaaactgatatttatagaaatgttttaccaacat |
208 |
Q |
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| T |
5582295 |
cagattcaattagttgagattcaacattgatatttatagaaatattttaataacattaatgcaaatgaaactgatatttatagaaatattttaacaacat |
5582196 |
T |
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| Q |
209 |
taatgcaaatgaaacaccgttactttgtttct |
240 |
Q |
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|||||||||||||| ||||||||||||||||| |
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| T |
5582195 |
taatgcaaatgaaataccgttactttgtttct |
5582164 |
T |
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