View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14193_high_10 (Length: 379)
Name: NF14193_high_10
Description: NF14193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14193_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 31 - 359
Target Start/End: Original strand, 11908953 - 11909281
Alignment:
| Q |
31 |
tagggtgttatatagcttgtactagagcaggtcggtccatatacagcctaggttttatatttttatcatgtcatattaggctacatgtgtgtgaacacta |
130 |
Q |
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| T |
11908953 |
tagggtgttacatagcttgtactagagcaggtcggtccatatacagcctaggttttatatttttatcatgtcatattaggctacatgtgtgtgaacacta |
11909052 |
T |
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| Q |
131 |
caaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggcaattgctgaagccttggcagcg |
230 |
Q |
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| T |
11909053 |
caaatgcctaactccttagtaattttctgatttatggtgatgcatataagaaacggtaggaggcagaaatgatcaggcaattgctgaagccttgccagcg |
11909152 |
T |
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| Q |
231 |
atggcatccaaatcagcagggaagtaacgatgagttccgagcactgggaagatttcaaggggaggtacgatcctcgaggtgctcagatttggatccaagc |
330 |
Q |
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| T |
11909153 |
atggcatccaaatcagcagggaagtaacgacgagttccgagcaccgtgaagatttcaaggggaggtacgatcctcgaggtgctcagatttggatccaagc |
11909252 |
T |
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| Q |
331 |
gattgagaagatttacataatgatgatgt |
359 |
Q |
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| T |
11909253 |
gattgagaagatttacataatgatgatgt |
11909281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 11918597 - 11918552
Alignment:
| Q |
314 |
cagatttggatccaagcgattgagaagatttacataatgatgatgt |
359 |
Q |
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| T |
11918597 |
cagatttggatccaagcgattgagaagatttacataatgatgatgt |
11918552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 11777347 - 11777447
Alignment:
| Q |
132 |
aaatgcctaactccttagtaattttctgatttacggtgatgcatataagaaacggtaggaggtagaaatgatcaggcaattgctgaagccttggcagcga |
231 |
Q |
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| T |
11777347 |
aaatgcctaactcttaaataattgtctgattct-ggtgatgcagataagaaaaggttagaggtagaaatgatcaggcaattaccgaagcctttgtagcga |
11777445 |
T |
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| Q |
232 |
tg |
233 |
Q |
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|| |
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| T |
11777446 |
tg |
11777447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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