View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14193_high_5 (Length: 440)
Name: NF14193_high_5
Description: NF14193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14193_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 309 - 419
Target Start/End: Original strand, 11452286 - 11452396
Alignment:
| Q |
309 |
tactagttaccatcataatgagaaggaggaaaagcattgggaataagaaaaagctggtagaacatggcagcagagaagagaagaagaggaagtgcgtagg |
408 |
Q |
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| T |
11452286 |
tactagttaccatcataatgagaaggaggaaaagcattgggaataagaaaaagctggtagaacatggcagcagagaagagaagaagaggaagtgcgtagg |
11452385 |
T |
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| Q |
409 |
ctttgatgatg |
419 |
Q |
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| T |
11452386 |
ctttgatgatg |
11452396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 11452146 - 11452224
Alignment:
| Q |
168 |
accatttagattcaagattgacataagcctccttcacttcatcaatcgaactatacatcttaattctcagaactgcatt |
246 |
Q |
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| T |
11452146 |
accatttagattcaagattgacataagcttccttcacttcatcaatcgaactatacatcttaattctcagaactgcatt |
11452224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 11452003 - 11452079
Alignment:
| Q |
25 |
tcatggaaacaaacaatcactacatctatcggtgtcgtgtaggtgtctgataccaaacagcctttaatcttaagttg |
101 |
Q |
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| T |
11452003 |
tcatggaaacaaacaatcactacatctatcggtgtcgtgtaggtgtttgataccaaacagcctttaatcttaagttg |
11452079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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