View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14193_high_8 (Length: 386)

Name: NF14193_high_8
Description: NF14193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14193_high_8
NF14193_high_8
[»] chr6 (8 HSPs)
chr6 (1-373)||(31564316-31564698)
chr6 (114-278)||(33416366-33416536)
chr6 (235-364)||(33385707-33385837)
chr6 (290-349)||(33281320-33281376)
chr6 (307-361)||(33416538-33416592)
chr6 (290-349)||(33301947-33302003)
chr6 (12-77)||(33385605-33385670)
chr6 (13-77)||(33259895-33259959)
[»] chr5 (1 HSPs)
chr5 (115-269)||(30653203-30653360)
[»] chr2 (3 HSPs)
chr2 (232-361)||(17443374-17443503)
chr2 (12-77)||(17443537-17443602)
chr2 (31-83)||(43199930-43199982)
[»] scaffold0428 (2 HSPs)
scaffold0428 (13-77)||(3983-4047)
scaffold0428 (290-349)||(12876-12932)
[»] chr1 (1 HSPs)
chr1 (1-49)||(15581319-15581367)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 31564698 - 31564316
Alignment:
Q  1 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatccacaagaggcaaaacaata 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  31564698 atgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatgagtgtataagttcaaatatatcaatccacaagaggcaaaacaata 31564599  T
Q  101 tgagaagatgggcaaaatggaagtataattcattttttctcttttacat------gtaaaaattgaaatacatgtataaattcaaatctgtctaacatat 194  Q
    ||| |||||||||||||||||||||||||| ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  31564598 tgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatat 31564499  T
Q  195 ttacttctattagatgtagaaaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccgg 290  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564498 ttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccgg 31564399  T
Q  291 tttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564398 tttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactaccacaggt 31564316  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 114 - 278
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  114 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 211  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  212 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 278  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 364
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  235 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 333  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  334 aattgcaacttcttcatcttcaacttgtact 364  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  290 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 349  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  307 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 361  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  290 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 349  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 33385605 - 33385670
Alignment:
Q  12 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 77  Q
    ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385605 tgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 33259895 - 33259959
Alignment:
Q  13 gtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 77  Q
    |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259895 gtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

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Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 269
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  115 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 214  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  215 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 269  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 361
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  232 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 331  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  332 gcaattgcaacttcttcatcttcaacttgt 361  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  12 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 77  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  31 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 83  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

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Target: scaffold0428 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 3983 - 4047
Alignment:
Q  13 gtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 77  Q
    |||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  3983 gtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  290 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 349  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15581319 - 15581367
Alignment:
Q  1 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 49  Q
    |||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581319 atgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

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