View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14193_low_1 (Length: 637)
Name: NF14193_low_1
Description: NF14193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14193_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 299 - 623
Target Start/End: Complemental strand, 11105746 - 11105422
Alignment:
| Q |
299 |
atatgtaaaaagatgaatacgggacaaaacatctagagtgtgtgttttgtgaccaaatctcattttatatgaccacaaacaaaatatccttactattatt |
398 |
Q |
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| T |
11105746 |
atatgtaaaaagatgaatactggacaaaacatctagagtgtatgttttgtgaccaaatctcattttatatgaccacaaacaaaatatccttactattatt |
11105647 |
T |
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| Q |
399 |
tattacacattttcaacatttctccgatcaccggattccggtgaccggcgtcaacaccctcaaattcctgcaacccctaaaccctaaccaatccttcctc |
498 |
Q |
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| T |
11105646 |
tattacacattttcaacatttctccgatcaccggattccggtgaccggcgtcaacaccctcaaattcctgcaacccctaaaccctaaccaatccttcctc |
11105547 |
T |
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| Q |
499 |
catggattctccctcccaatccaaccaacaagatccccctcgccctcaaaggaacggtggcgtcatggctttcgtgatactccgatggattatcgcaatt |
598 |
Q |
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| T |
11105546 |
catggattctccctcccaatccaaccaacaagatccccctcgccctcaaaggaacggtggcgtcatggctttcgtgatactccgatggattatcgcaatt |
11105447 |
T |
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| Q |
599 |
ctattacccttcgttttcttattct |
623 |
Q |
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| T |
11105446 |
ctattacccttcgttttcttattct |
11105422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 11106039 - 11105763
Alignment:
| Q |
32 |
atccaagcttaccctctttttgtagtatatatgtcgtttttgttatgaattcagttgaaagaatcctctagcgacaatgcattgaacttgagatgcgtat |
131 |
Q |
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| T |
11106039 |
atccaagcatacccacttttagtagtatatatgccgtttttgttatgaattcagatgaaagtatcctccagtgacaacgcattgaacttgagatgcgtat |
11105940 |
T |
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| Q |
132 |
tatttatgaaatactgatatagtggacgagagctta-gagagtacgttatgaatgaataatgagtttttcacattattgataaagagattctcataaaaa |
230 |
Q |
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| T |
11105939 |
tatttatgaaattctgagacaatggacgagagcttaagagagtatgttatgaatcaataatgagtttttcacattattgataaagagattctcataaaaa |
11105840 |
T |
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| Q |
231 |
gaaaagaaattctataataataattatgtattatctacgtgacaaaaataaaatgaatttatgcggtaatatgtaaa |
307 |
Q |
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| T |
11105839 |
gaaaagaaattctataataataaatatgtattatctacgtgacaaaaataaaatgaatttatgcggtaatatctaaa |
11105763 |
T |
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