View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14193_low_3 (Length: 249)
Name: NF14193_low_3
Description: NF14193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14193_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 32348230 - 32348001
Alignment:
| Q |
18 |
atatcatattcctttataaacatactcgaccaaaaagtttattgcttgaagatggagtactccttcttacgagggtgtagatatgttacatcttctagcg |
117 |
Q |
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| T |
32348230 |
atatcatattcctttataaacatactcgaccaaaaagtttattgcttgaagatggagtactccttcttacgatggtgtagatatgttacgtcttctagcg |
32348131 |
T |
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| Q |
118 |
gatattttatcatggcgcattgccgtaataattcacttatgctaatcaacccattcacaagaataaagacgatagtcaatacccctacctctcaaggcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32348130 |
gatattttatcatggcgcattgccgtaataattcacttatgctaatcaacccattcacaagaataaagacgatagtcaatacccctacctctcaaagcaa |
32348031 |
T |
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| Q |
218 |
cttttttacaatcgatcgtgctttgcttgc |
247 |
Q |
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| T |
32348030 |
cttttttacaatcgatcgtgctttgcttgc |
32348001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 31266183 - 31266284
Alignment:
| Q |
108 |
tcttctagcggatattttatcatggcgcattgccgtaataattcacttatgctaatcaacccattcacaagaataaagacgatagtcaatacccctacct |
207 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||| | ||||||||||| | || ||||||||||||||| |
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| T |
31266183 |
tcttctagcggatattttatcatggcaaattagaacaataatttacttatgttaatcaacccatttaaaagaataaagaaggtaatcaatacccctacct |
31266282 |
T |
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| Q |
208 |
ct |
209 |
Q |
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|| |
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|
| T |
31266283 |
ct |
31266284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 43156973 - 43156885
Alignment:
| Q |
116 |
cggatattttatcatggcgcattgccgtaataattcacttatgctaatcaacccattcacaagaataaagacgatagtcaataccccta |
204 |
Q |
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| T |
43156973 |
cggatattttatcttggcggagtgccacactaatacacttatgctaatcaacccatttacaagaataaagaagttaatcaatgccccta |
43156885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 40026589 - 40026623
Alignment:
| Q |
99 |
tatgttacatcttctagcggatattttatcatggc |
133 |
Q |
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| T |
40026589 |
tatgttacgtcttctagcggatattttatcatggc |
40026623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 33859963 - 33859996
Alignment:
| Q |
99 |
tatgttacatcttctagcggatattttatcatgg |
132 |
Q |
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| T |
33859963 |
tatgttacattttctagcggatattttatcatgg |
33859996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 33920960 - 33920927
Alignment:
| Q |
99 |
tatgttacatcttctagcggatattttatcatgg |
132 |
Q |
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| T |
33920960 |
tatgttacattttctagcggatattttatcatgg |
33920927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 47987374 - 47987322
Alignment:
| Q |
20 |
atcatattcctttataaacatactcgaccaaaaagtttattgcttgaagatgg |
72 |
Q |
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||||| ||||||||| | ||||| | |||||||||||||||||| |||||||| |
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| T |
47987374 |
atcattttcctttattagcatacccaaccaaaaagtttattgctcgaagatgg |
47987322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 49441045 - 49441005
Alignment:
| Q |
144 |
aataattcacttatgctaatcaacccattcacaagaataaa |
184 |
Q |
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||||||||| ||||||||||||| ||||| ||||||||||| |
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| T |
49441045 |
aataattcatttatgctaatcaatccatttacaagaataaa |
49441005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 49541171 - 49541115
Alignment:
| Q |
144 |
aataattcacttatgctaatcaacccattcacaagaataaagacgatagtcaatacc |
200 |
Q |
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||||||||| ||||||||||||| ||||| ||||| ||||||| | || |||||||| |
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| T |
49541171 |
aataattcatttatgctaatcaatccatttacaaggataaagaaggtaatcaatacc |
49541115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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