View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_high_12 (Length: 351)
Name: NF14194_high_12
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 35677392 - 35677075
Alignment:
| Q |
19 |
tatatattttttatattatgttttaaacggtacaaaaatagttcaatatatgaaaaactagtctattttattccactccttttgttactattaatccgga |
118 |
Q |
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| T |
35677392 |
tatatattttttatattatgttttaaacggtaaaaaaatagttcaatatatgaaaaactagtctattttattccactccttttgttactattaatccgga |
35677293 |
T |
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| Q |
119 |
gattataacttatacttttctgtcaaccattaccggaataccagttattgtacttatgttgattttgttttctttttgaaagaatgattaattaa--ttg |
216 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
35677292 |
gattataacttatacttttctttcaaccattaccggaataccagttattgtacttatgttgattttgttttctttttgaaagaatgattaattaatgttg |
35677193 |
T |
|
| Q |
217 |
cattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggctttttcgtaaacccagaagagatggaagaaatggaaacatatctagagaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
35677192 |
cattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggctttttcttaaacccagaagagatggaagaaatggaaagatatcttgagaaa |
35677093 |
T |
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| Q |
317 |
tcaatcaagggattgcct |
334 |
Q |
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|||||||||||||||||| |
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| T |
35677092 |
tcaatcaagggattgcct |
35677075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 169 - 322
Target Start/End: Complemental strand, 35683277 - 35683122
Alignment:
| Q |
169 |
tacttatgttgattttgttttctttttgaaagaatgattaattaat--tgcattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggct |
266 |
Q |
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| T |
35683277 |
tacttatgttgattttgttttctttttgaaggaatgattaattaatgttgcattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggct |
35683178 |
T |
|
| Q |
267 |
ttttcgtaaacccagaagagatggaagaaatggaaacatatctagagaaatcaatc |
322 |
Q |
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| T |
35683177 |
ttttcgtaaacccaaaagagatggaagaaatggaaagatatctagagcaatcaatc |
35683122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 35683408 - 35683306
Alignment:
| Q |
19 |
tatatattttttatattatgttttaaacggtacaaaaatagttcaatatatgaaaaactagtctattttattccactccttttgttactattaatccgga |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
35683408 |
tatatattttttatattatgttttaaacggcacaaaatt-gttcaatatatgaaaaactagtatattttattccactccttttattactattaatccgga |
35683310 |
T |
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| Q |
119 |
gatt |
122 |
Q |
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|||| |
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| T |
35683309 |
gatt |
35683306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 302
Target Start/End: Complemental strand, 25680576 - 25680453
Alignment:
| Q |
181 |
ttttgttttctttttgaaagaatgattaattaatt--gcattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggctttttcgtaaacc |
278 |
Q |
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|||| |||||||||| ||||| ||||||||||| ||||||| ||||||||||| |||||| | |||||||||||| ||||| |||||||||| | |
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| T |
25680576 |
ttttattttcttttttgaagaaaaattaattaattttgcattgtgcgtatatgatacaagtttgaatatataaaaaaggagggaggatttttcgtaagca |
25680477 |
T |
|
| Q |
279 |
cagaagagatggaagaaatggaaa |
302 |
Q |
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|| |||||||||||| |||||||| |
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| T |
25680476 |
caaaagagatggaagcaatggaaa |
25680453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 35668346 - 35668238
Alignment:
| Q |
188 |
ttctttttgaaagaatgattaattaattgcattgtatgtatatgataccagtttgcgtttataaaaaaggatggaggctttttcgtaaacccagaagaga |
287 |
Q |
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|||||||| ||||||| |||||| ||| ||||| |||||||||||| ||||||| | ||||||| || | ||||||||||||||||| | ||||| |
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| T |
35668346 |
ttcttttttaaagaataattaatg--ttgtattgtttgtatatgatacaagtttgcatatataaaagagaacagaggctttttcgtaaacgaaagagaga |
35668249 |
T |
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| Q |
288 |
tggaagaaatg |
298 |
Q |
| |
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||||||||||| |
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| T |
35668248 |
tggaagaaatg |
35668238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 302
Target Start/End: Complemental strand, 24931039 - 24930962
Alignment:
| Q |
225 |
gtatatgataccagtttgcgtttataaaaaaggatggaggctttttcgtaaacccagaagagatggaagaaatggaaa |
302 |
Q |
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||||||||||| |||||| | |||||||||||| ||||| |||||| ||| | || |||||||||||| |||||||| |
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| T |
24931039 |
gtatatgatacaagtttgaatatataaaaaaggagggaggatttttcataagcacaaaagagatggaagcaatggaaa |
24930962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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