View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_high_21 (Length: 253)

Name: NF14194_high_21
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_high_21
NF14194_high_21
[»] chr2 (3 HSPs)
chr2 (25-97)||(39411882-39411954)
chr2 (146-233)||(39411950-39412028)
chr2 (47-105)||(39157080-39157138)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 39411882 - 39411954
Alignment:
Q  25 taacatatttaagcctatggagatttaaaatacatgagaaagaaacactagaaagccaagaaacagagataat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39411882 taacatatttaagcctatggagatttaaaatacatgagaaagaaagactagaaagccaagaaacagagataat 39411954  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 39411950 - 39412028
Alignment:
Q  146 ataatgtaaagaaatgcggttatggaaacctgctaacataaatattactactactactaccggaggacatacatattcacatgtaaaa 233  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||          ||||||||||||||||||||||||||    
T  39411950 ataatgtaaagaaatgtggttatggaaacctgctaacataaatactactactc---------gaggacatacatattcacatgtaaaa 39412028  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 39157138 - 39157080
Alignment:
Q  47 atttaaaatacatgagaaagaaacactagaaagccaagaaacagagataatcctgttaa 105  Q
    |||||||||||| |||||||||| | ||  ||||||||||| || ||||||||||||||    
T  39157138 atttaaaatacaagagaaagaaagattatgaagccaagaaatagtgataatcctgttaa 39157080  T

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