View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_high_6 (Length: 460)
Name: NF14194_high_6
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 30408771 - 30409219
Alignment:
| Q |
1 |
taccttgagatctagctctcttcataggatccgaaagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccagattgtg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30408771 |
taccttgagatctagctctcttcataggatctgaaagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccggattgtg |
30408870 |
T |
|
| Q |
101 |
ttttgcatctttcccccatgactgaatgtttccccataccgaatcagcatcaactctatcacatgtttcattggcttcagcattttctgatatctcatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408871 |
ttttgcatctttcccccatgactgaatgtttccccataccgaatcagcatcaactctatcacatgtttcattggcttcagcattttctgatatctcatca |
30408970 |
T |
|
| Q |
201 |
ctagaaggtactgatcctcggcgacatgaatgtggttttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttcca |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408971 |
ctagaaggtactgatcctcggcgacttgaatgtggttttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttcca |
30409070 |
T |
|
| Q |
301 |
cctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409071 |
cctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattata |
30409170 |
T |
|
| Q |
401 |
accatcctctgaggtctttgctcctgctgcatgagacatctctttctgt |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409171 |
accatcctctgaggtctttgctcctgctgcatgagacatctctttctgt |
30409219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 164 - 449
Target Start/End: Original strand, 30395273 - 30395558
Alignment:
| Q |
164 |
tgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacatgaatgtggttttgcatggttatgattacccttgtaa |
263 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
30395273 |
tgtttcattggcttcagcattttctgacatttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttatgattaccactgtaa |
30395372 |
T |
|
| Q |
264 |
ataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactac |
363 |
Q |
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||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |
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| T |
30395373 |
ataatttctcttatgttgccatcatgtgatctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgc |
30395472 |
T |
|
| Q |
364 |
cttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcctgctgcatgagacatctctttctgt |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |
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| T |
30395473 |
cttttacttgtttttggccatattttctccaattataaccatcctgtaaggtctttgctcctgctgcatgagatatctctttctgt |
30395558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 30395137 - 30395271
Alignment:
| Q |
1 |
taccttgagatctagctctcttcataggatccgaaagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccagattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
30395137 |
taccttgagatctagctctcttcataggatccgaaagcccggtgacatcagaaggttgggatgtcctttcttgaccatcaggcttccattccggattgtg |
30395236 |
T |
|
| Q |
101 |
ttttgcatctttcccccatgactgaatgtttcccc |
135 |
Q |
| |
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|||||||||||| || | |||||||||||||||| |
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|
| T |
30395237 |
ttttgcatcttttcctcgcgactgaatgtttcccc |
30395271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 406
Target Start/End: Original strand, 26332563 - 26332619
Alignment:
| Q |
350 |
cggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
406 |
Q |
| |
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||||| ||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
26332563 |
cggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
26332619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 409
Target Start/End: Complemental strand, 2056390 - 2056297
Alignment:
| Q |
316 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctc |
409 |
Q |
| |
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||||||| ||||||||||| |||||||| |||| || || || ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
2056390 |
gacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattatatccatcctc |
2056297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 412
Target Start/End: Original strand, 26967038 - 26967134
Alignment:
| Q |
316 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
412 |
Q |
| |
|
||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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| T |
26967038 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
26967134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 31615355 - 31615428
Alignment:
| Q |
333 |
catttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
406 |
Q |
| |
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||||||||||| |||||||||| |||||| || || ||||| ||||| |||||||||| |||||| || ||||| |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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