View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_low_1 (Length: 641)

Name: NF14194_low_1
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_low_1
NF14194_low_1
[»] chr5 (7 HSPs)
chr5 (353-626)||(14724781-14725045)
chr5 (11-185)||(14725177-14725347)
chr5 (249-337)||(14725031-14725115)
chr5 (16-61)||(42522723-42522768)
chr5 (21-69)||(8515620-8515668)
chr5 (26-61)||(16321038-16321073)
chr5 (16-61)||(17822185-17822230)
[»] chr3 (4 HSPs)
chr3 (11-113)||(35258872-35258973)
chr3 (16-61)||(17583228-17583273)
chr3 (16-61)||(19578700-19578745)
chr3 (27-59)||(48240026-48240058)
[»] chr6 (2 HSPs)
chr6 (16-67)||(8478980-8479031)
chr6 (16-61)||(22793690-22793735)
[»] scaffold1777 (1 HSPs)
scaffold1777 (16-61)||(595-640)
[»] chr8 (3 HSPs)
chr8 (16-69)||(13206131-13206184)
chr8 (16-61)||(19341870-19341915)
chr8 (32-60)||(295999-296027)
[»] chr7 (1 HSPs)
chr7 (16-61)||(29285589-29285634)
[»] chr4 (3 HSPs)
chr4 (31-60)||(44342290-44342319)
chr4 (16-69)||(47044843-47044896)
chr4 (16-61)||(47393568-47393613)
[»] chr2 (2 HSPs)
chr2 (16-69)||(23914587-23914640)
chr2 (29-69)||(23914786-23914826)
[»] chr1 (4 HSPs)
chr1 (16-69)||(35632987-35633040)
chr1 (17-69)||(10428263-10428315)
chr1 (29-69)||(14259162-14259202)
chr1 (29-69)||(27856532-27856572)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-60)||(36811-36855)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 353 - 626
Target Start/End: Complemental strand, 14725045 - 14724781
Alignment:
Q  353 tcctcatctttatgtgtgtatcctaacttctttgcagaaagacatattagcaatacaaattcacggatcacttttgagtacctagatcatttaattcttc 452  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14725045 tcctcatctttatgtgtgtatcctaacttctttacagaaagacatattagcaatacaaattcacggatcacttttgagtacctagatcatttaattcttc 14724946  T
Q  453 aataattctttggaggaagagcccttagagacccttaatcccatggcaaataaggatgcgacacattcacaatgagacaataacctcattttggctattg 552  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14724945 aataattctttggaggaagag---------acccttaatcccatggcaaataaggatgcgacacattcacaatgagacaataacctcattttggctattg 14724855  T
Q  553 aagtgtgtaatttcctcacccatgtgatatttttaattagtttttgtcactatggaatgttcattgtgtctttt 626  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14724854 gagtgtgtaatttcctcacccatgtgatatttttaattagtttttgtcactatggaatgttcattgtgtctttt 14724781  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 14725347 - 14725177
Alignment:
Q  11 ccaagaatataattaaatttcttatatttttcaataacaccaacaatataaaattcttacacacatttttgataaaagtataactgaaatagtaaaaaat 110  Q
    |||| |||||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||   |||||    
T  14725347 ccaataatataataaaaattcttatatttttcaataacaccagcaatataacattcttacacacaaatttgataaaagtataactgaaatag---aaaat 14725251  T
Q  111 tcagaaagnnnnnnnccatgactccctttatatatttgttgtatacaatattataccaatacagttgtagataaa 185  Q
    ||||||||       ||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  14725250 tcagaaagaaaaaaaccatgactccctttatata-ttgttgtatacaatatcataccaatactgttgtagataaa 14725177  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 14725115 - 14725031
Alignment:
Q  249 aatcatggtgttggacataaaaaatgatctccacggccacgtgacatttatctaaaaatatgtgtgatatattgtcctcatctttatgt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  14725115 aatcatggtgttggacataaaaaatgatctccacggccacgtgacatttatctaaaaatatgtgtg----attgtcctcatctttatgt 14725031  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 42522723 - 42522768
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||    
T  42522723 aatataataaaaattcttatattttttaataacaccaacaatataa 42522768  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 8515620 - 8515668
Alignment:
Q  21 aattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||| ||||||| ||||||||||||||||| ||||||| |||||||    
T  8515620 aattaaaattcttatctttttcaataacaccaataatataacattctta 8515668  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 16321038 - 16321073
Alignment:
Q  26 aatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||||||||||||||| |||||||||||||||    
T  16321038 aatttcttatatttttcaatgacaccaacaatataa 16321073  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 17822185 - 17822230
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||  ||| ||||||| |||||||||||||||||||||||||    
T  17822185 aatataacaaaaattcttatctttttcaataacaccaacaatataa 17822230  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 35258872 - 35258973
Alignment:
Q  11 ccaagaatataattaaatttcttatatttttcaataacaccaacaatataaaattcttacacacatttttgataaaagtataactgaaatagtaaaaaat 110  Q
    |||| |||||||| ||| ||||||| ||||||||||||| ||||||||||| ||| ||| |  ||  ||||||||  |||||| ||||||| ||||||||    
T  35258872 ccaataatataataaaaattcttatctttttcaataacatcaacaatataacatt-ttaaaagcaaatttgataagggtataattgaaataataaaaaat 35258970  T
Q  111 tca 113  Q
    |||    
T  35258971 tca 35258973  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 17583273 - 17583228
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  17583273 aatataataaaaattcttatcttttttaataacaccaacaatataa 17583228  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 19578745 - 19578700
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||| |||  |||||||||||| |||||||||||||||||||    
T  19578745 aatataataaaaactcttatattttttaataacaccaacaatataa 19578700  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 48240058 - 48240026
Alignment:
Q  27 atttcttatatttttcaataacaccaacaatat 59  Q
    |||||||||||||||||||| ||||||||||||    
T  48240058 atttcttatatttttcaatagcaccaacaatat 48240026  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 8479031 - 8478980
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataaaattct 67  Q
    |||||||| ||| ||||||||||||||| ||||| |||||||||||| ||||    
T  8479031 aatataataaaaattcttatatttttcattaacatcaacaatataaacttct 8478980  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 22793690 - 22793735
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  22793690 aatataataaaaattcttatctttttaaataacaccaacaatataa 22793735  T

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Target: scaffold1777 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1777
Description:

Target: scaffold1777; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 640 - 595
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    ||||||||  || ||||||||||||||||||| |||||||||||||    
T  640 aatataatataaattcttatatttttcaataataccaacaatataa 595  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 13206131 - 13206184
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    |||||| | ||| ||||||| ||||||| ||||||||||||||||| |||||||    
T  13206131 aatatattaaaaattcttatctttttcattaacaccaacaatataacattctta 13206184  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 19341915 - 19341870
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    |||||||| ||| ||||||||||||| |||||| ||||||||||||    
T  19341915 aatataataaaaattcttatattttttaataacgccaacaatataa 19341870  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 60
Target Start/End: Original strand, 295999 - 296027
Alignment:
Q  32 ttatatttttcaataacaccaacaatata 60  Q
    |||||||||||||||||||||||||||||    
T  295999 ttatatttttcaataacaccaacaatata 296027  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 29285634 - 29285589
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    ||||||||  || ||||||| |||||||||||||||||||||||||    
T  29285634 aatataatataaattcttatgtttttcaataacaccaacaatataa 29285589  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 60
Target Start/End: Original strand, 44342290 - 44342319
Alignment:
Q  31 cttatatttttcaataacaccaacaatata 60  Q
    ||||||||||||||||||||||||||||||    
T  44342290 cttatatttttcaataacaccaacaatata 44342319  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 47044843 - 47044896
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||||| || ||||||| |||||||||||||||| ||| |||| |||||||    
T  47044843 aatataatttaaattcttatctttttcaataacaccagcaaaataacattctta 47044896  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 47393613 - 47393568
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataa 61  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||    
T  47393613 aatataatataatttcttatatttttgaatgacaccaacaatataa 47393568  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 23914640 - 23914587
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||||  || ||||||| |||||||||||||| |||||||||| |||||||    
T  23914640 aatataatataaattcttatctttttcaataacacaaacaatataacattctta 23914587  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 23914826 - 23914786
Alignment:
Q  29 ttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  23914826 ttcttatatttttcaatattaccaacaatataacattctta 23914786  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 35633040 - 35632987
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||||  || ||||||||||||| |||||||||||||| |||| |||||||    
T  35633040 aatataatataaattcttatattttttaataacaccaacaaaataacattctta 35632987  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10428263 - 10428315
Alignment:
Q  17 atataattaaatttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||| ||| ||||||| |||||||| |||||||||||||||  |||||||    
T  10428263 atataataaaaattcttatctttttcaagaacaccaacaatatagcattctta 10428315  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 14259202 - 14259162
Alignment:
Q  29 ttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||||||||||||| |||||||||| |||| |||||||    
T  14259202 ttcttatatttttcaatgacaccaacaaaataatattctta 14259162  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 27856572 - 27856532
Alignment:
Q  29 ttcttatatttttcaataacaccaacaatataaaattctta 69  Q
    ||||||| |||||||||||| ||||||||||| ||||||||    
T  27856572 ttcttatctttttcaataacgccaacaatatagaattctta 27856532  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 36855 - 36811
Alignment:
Q  16 aatataattaaatttcttatatttttcaataacaccaacaatata 60  Q
    |||||||| ||| ||||||| ||||| ||||||||||||||||||    
T  36855 aatataataaaaattcttatcttttttaataacaccaacaatata 36811  T

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