View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_16 (Length: 323)
Name: NF14194_low_16
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 43621379 - 43621504
Alignment:
| Q |
5 |
tagtatttttaactgtgtttgttcaatctttttaaattaattagaatataaaataatggtttgtctgattaaaatgtaaagctatttccagtagcttcaa |
104 |
Q |
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| T |
43621379 |
tagtatttttaactgtgtttgttcaatctttttaaattaattagaatataaaataatggtttgtctgattaaaatgtaaagctatttccagtagcttcaa |
43621478 |
T |
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| Q |
105 |
aaaatgattttaatgagtgaaccatt |
130 |
Q |
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| T |
43621479 |
aaaatgattttaatgagtgaaccatt |
43621504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 213 - 308
Target Start/End: Original strand, 43621587 - 43621682
Alignment:
| Q |
213 |
attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaataatacaagatat |
308 |
Q |
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| T |
43621587 |
attatttttattttaatctcaaatatatttatggtatgaaatgtgaataacaggactattgaggaagcaattaagagtgctaataatacaagatat |
43621682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 308
Target Start/End: Original strand, 43628079 - 43628134
Alignment:
| Q |
253 |
atgtgaataacaggactattgaggaagcaattaagagtgctaataatacaagatat |
308 |
Q |
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| T |
43628079 |
atgtgaataacaggactattgaggaagccattaagagtgccaacaataccagatat |
43628134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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