View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_19 (Length: 302)
Name: NF14194_low_19
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 43019104 - 43018819
Alignment:
| Q |
1 |
taaaaaaggacatctaacaaaaaggagataaattgactttacaagctcattacaaaaaataccatcagagtcaactataacactcctaaaaagagattat |
100 |
Q |
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| T |
43019104 |
taaaaaaggacatctaacaaaaaggagataaattgactttacaagctcattacaaaaaataccatcagagtcaactataacactcctaaaaagagattat |
43019005 |
T |
|
| Q |
101 |
gtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttaagatgagaccaaaactcacaccctttacaagaagttgcataatttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43019004 |
gtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttgagatgagatcaaaactcacaccctttacaagaagttgcataatttct |
43018905 |
T |
|
| Q |
201 |
tctgacctcacttccaccatactaactctcatatgaaggaaagtatagcgtatgacattgcatataactttaagggacgtttgttt |
286 |
Q |
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| T |
43018904 |
tctgacctctcttccaccatactaactctcatatgaaggaaagtatagcgtatgacattgcatataactttaagggacgtttgttt |
43018819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 30599806 - 30599978
Alignment:
| Q |
71 |
tcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcaccttaagatgagaccaaaa-- |
167 |
Q |
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||||||||||| ||||| ||||||||||||| ||||||| |||| | | |||||| |||| || ||||| ||||||||||| |||||||| || | |
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| T |
30599806 |
tcaactataactctccttcaaaagagattatgccgagtcacaatcatattctgaagcagttgacatgagaaaacattcaccttgagatgagatgaagatt |
30599905 |
T |
|
| Q |
168 |
ctcacaccctttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa |
241 |
Q |
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| T |
30599906 |
ctcacaccc-ttgcaataagttgcacaattttttatgaccttttgtccaccacactaactctcatgtgaaggaa |
30599978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 6035325 - 6035211
Alignment:
| Q |
128 |
gttgtcaagagaatacattcaccttaagatgagaccaaaactcacac-cctttacaagaagttgcataatttcttctgacctcacttccaccatactaac |
226 |
Q |
| |
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|||| |||||||| || |||||||| ||| |||||||| |||| || ||||| |||||| ||||||||||| |||||||||| |||||| |||| | |
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| T |
6035325 |
gttgccaagagaaaactttcaccttgagaagagaccaagactcccaaacctttgaaagaagctgcataatttcatctgacctcatatccacctcactagc |
6035226 |
T |
|
| Q |
227 |
tctcatatgaaggaa |
241 |
Q |
| |
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|||| ||| |||||| |
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| T |
6035225 |
tctcttataaaggaa |
6035211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 12759965 - 12759899
Alignment:
| Q |
182 |
aagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaaagtatag |
248 |
Q |
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| T |
12759965 |
aagaagtcgcacaatttcttctgacctctcatccaccacactagctctcatattaaggaaattatag |
12759899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 241
Target Start/End: Complemental strand, 13956784 - 13956593
Alignment:
| Q |
52 |
acaaaaaataccatcagagtcaactataacactccta-aaaagagattatgtcgagtcaaaatcctttcgtgaagctgttgtcaagagaatacattcacc |
150 |
Q |
| |
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|||| |||||||| ||| |||||||||| ||||| |||||||||| || |||||| |||| | || |||| | | || |||||||| ||||||||| |
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| T |
13956784 |
acaagaaataccaccaggatcaactataattctccttgaaaagagattctggcgagtcggaatcgtatcctgaatcagctggcaagagaaaacattcacc |
13956685 |
T |
|
| Q |
151 |
ttaagatgagaccaaaactcacaccct-ttacaagaagttgcataatttcttctgacctcacttccaccatactaactctcatatgaaggaa |
241 |
Q |
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|| || ||||||| |||| ||| || || ||||||| |||| || |||||||||| |||| ||| ||| |||| |||| ||||||||||| |
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| T |
13956684 |
ttgcgaggagaccacgactctcacactcttgcaagaagctgcacaaattcttctgacttcacatcccccacactagctcttatatgaaggaa |
13956593 |
T |
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