View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_21 (Length: 278)
Name: NF14194_low_21
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 43621343 - 43621070
Alignment:
| Q |
1 |
tcttacattattagtaacactaacattaggttgtatatactaaatctacaatat---------aacnnnnnnnnnnnnncttacttaaacttcttcagtg |
91 |
Q |
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| T |
43621343 |
tcttacattattagtaacactaacattaggttgtatatactaaatctacaatataagaaataaaaaaaaataaaaaaaacttacttaaacttcttcagtg |
43621244 |
T |
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| Q |
92 |
ccatcacaggaccaaatatttcatcctgtgctataaccatatcatcctaaacaagtagttaaacaatttgtaaagcaatggttattaattatgcctaaca |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43621243 |
ccatcacaggaccaaatatttcatcctgtgctataaccatatcatcctaaacaagtagttaaacaatttgtaaagcaatggttattaattatgcctaaca |
43621144 |
T |
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| Q |
192 |
ta-aaaaattgattgtggacttgttattcacctttatattggagaaaattgttggttcaatgtagtatcctttg |
264 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43621143 |
tacaaaaattgattgtggacttgttattcacctttatattggagaaaattgttggttcaatatagtatcctttg |
43621070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 43628001 - 43627930
Alignment:
| Q |
71 |
cttacttaaacttcttcagtgccatcacaggaccaaatatttcatcctgtgctataaccatatcatcctaaa |
142 |
Q |
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| T |
43628001 |
cttacttgaacttcattagtgccatcacagggccaaatatttcatcctgtgctataagcatgtcctcctaaa |
43627930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 43627821 - 43627784
Alignment:
| Q |
220 |
acctttatattggagaaaattgttggttcaatgtagta |
257 |
Q |
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| T |
43627821 |
acctttacattggagaaaattgtaggttcaatgtagta |
43627784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 32406535 - 32406590
Alignment:
| Q |
71 |
cttacttaaacttcttcagtgccatcacaggaccaaatatttcatcctgtgctata |
126 |
Q |
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||||||| |||||| | |||||||| ||||| |||||||||||||| ||||||||| |
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| T |
32406535 |
cttacttgaacttcatgagtgccatgacagggccaaatatttcatcttgtgctata |
32406590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 32435153 - 32435100
Alignment:
| Q |
88 |
agtgccatcacaggaccaaatatttcatcctgtgctataaccatatcatcctaa |
141 |
Q |
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|||||||| ||||| |||||||||||||| |||||||| | ||| ||||||||| |
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| T |
32435153 |
agtgccataacaggtccaaatatttcatcttgtgctattaacatgtcatcctaa |
32435100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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