View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_low_23 (Length: 272)

Name: NF14194_low_23
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_low_23
NF14194_low_23
[»] chr2 (5 HSPs)
chr2 (40-254)||(34563167-34563379)
chr2 (13-101)||(39819060-39819151)
chr2 (25-86)||(12918545-12918606)
chr2 (40-101)||(7755363-7755424)
chr2 (192-241)||(34572004-34572053)
[»] chr8 (2 HSPs)
chr8 (40-101)||(31470771-31470832)
chr8 (40-101)||(7931594-7931655)
[»] chr6 (3 HSPs)
chr6 (25-101)||(28581802-28581877)
chr6 (40-101)||(369489-369550)
chr6 (40-101)||(16193757-16193818)
[»] chr1 (7 HSPs)
chr1 (25-101)||(10449518-10449593)
chr1 (25-101)||(9379830-9379906)
chr1 (25-101)||(9884853-9884929)
chr1 (13-93)||(6539637-6539720)
chr1 (41-100)||(15928145-15928204)
chr1 (32-102)||(44938863-44938933)
chr1 (40-101)||(50754751-50754812)
[»] chr4 (10 HSPs)
chr4 (13-90)||(32008317-32008397)
chr4 (13-101)||(31846861-31846952)
chr4 (32-101)||(53937919-53937988)
chr4 (40-101)||(6607465-6607526)
chr4 (40-101)||(31012154-31012215)
chr4 (40-101)||(32224311-32224372)
chr4 (40-82)||(54223580-54223622)
chr4 (32-69)||(44023039-44023076)
chr4 (40-80)||(9712943-9712983)
chr4 (13-64)||(54613030-54613084)
[»] scaffold0343 (1 HSPs)
scaffold0343 (40-97)||(12281-12338)
[»] chr5 (5 HSPs)
chr5 (40-101)||(42772035-42772096)
chr5 (13-86)||(29385370-29385446)
chr5 (25-98)||(1839983-1840056)
chr5 (27-93)||(7137655-7137721)
chr5 (40-101)||(9177915-9177976)
[»] chr3 (6 HSPs)
chr3 (40-101)||(22893969-22894030)
chr3 (25-82)||(29081611-29081668)
chr3 (40-101)||(31342034-31342095)
chr3 (40-101)||(11512414-11512475)
chr3 (24-86)||(20286915-20286977)
chr3 (41-101)||(25786950-25787010)
[»] chr7 (5 HSPs)
chr7 (51-99)||(25099321-25099369)
chr7 (40-101)||(17272726-17272787)
chr7 (42-101)||(7211968-7212027)
chr7 (40-92)||(7211887-7211939)
chr7 (57-101)||(29407563-29407607)
[»] scaffold0001 (1 HSPs)
scaffold0001 (28-101)||(507731-507804)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 40 - 254
Target Start/End: Complemental strand, 34563379 - 34563167
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaat 139  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563379 gtgacattgaccaacttcaatgtcacaagtatctttcttcattttctttcacaatattttttatactcattttcaaattgcaccggtcatgctacaaaat 34563280  T
Q  140 ggtagattcaatttaaatatctaaaagaaacatatcagccaccttccttggcaatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtac 239  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34563279 ggtagattcaatttaaatatctaaaag--acatatcagccaccttccttggcaatccacgttgaagcacaaaaccgttgaaacatgcaacttccacgtac 34563182  T
Q  240 actgtctctctaatt 254  Q
    |||||||||||||||    
T  34563181 actgtctctctaatt 34563167  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 39819060 - 39819151
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||   ||||| ||||||| ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 39819151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 12918545 - 12918606
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 86  Q
    |||||||||||||| ||||||||| |||||| |||||||||| ||  |||| ||||||||||    
T  12918545 tggttgatgacattggtgacattggccaaccacaatgtcacatgtggcttttttctttttct 12918606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 7755363 - 7755424
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| |||||| |||||||||||||  |||| |||||||||| | |||| |||||||    
T  7755363 gtgacattggccaaccacaatgtcacaagtggcttttttctttttctttaacaagatttttt 7755424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 34572053 - 34572004
Alignment:
Q  192 aatccacgctgaagcacaaaaccgttgaaacatgcaacttccacgtacac 241  Q
    |||||||| |||| || ||||||||| || ||||||||||||||||||||    
T  34572053 aatccacgttgaaacataaaaccgttaaagcatgcaacttccacgtacac 34572004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 31470771 - 31470832
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  31470771 gtgacattgaccaaccacaatgtcacaagtatcattcttctttttctttcacaatatttttt 31470832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 7931655 - 7931594
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| | |||| ||||||||||| | |||||||||||| ||| ||| ||||||||||    
T  7931655 gtgacattggcaaaccacaatgtcacaaatgtctttcttctttctctttcataatatttttt 7931594  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 28581877 - 28581802
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||| |||| |||||||||| ||||| |||||||| |||||||||||| ||| ||||||||||||||    
T  28581877 tggttgatgacatt-gtgatattgaccaacatcaatatcacaagtgtctttcttctttctctttcacaatatttttt 28581802  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 369550 - 369489
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||||| ||||||||||||| |||||||||||| ||| ||||| | ||||||    
T  369550 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctctttcacagtttttttt 369489  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 16193757 - 16193818
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||| |||| |||| | ||||||||||||| |||||||||||| ||  ||||||||||||||    
T  16193757 gtgatattggccaatcacaatgtcacaagtgtctttcttctttctccttcacaatatttttt 16193818  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Complemental strand, 10449593 - 10449518
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||| ||||||| |||||||||  ||||| ||||||||||| |||||||||||||| ||| ||||||||||||||    
T  10449593 tggttggtgacatt-gtgacattggtcaaccacaatgtcacaaatatctttcttctttctctttcacaatatttttt 10449518  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 9379830 - 9379906
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9379830 tggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9379906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 9884853 - 9884929
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||| ||||||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  9884853 tggttggtgacattggtgacattggtcaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 9884929  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 6539720 - 6539637
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 93  Q
    |||||||||||||   ||||||||| ||| |||||||||  ||||| |||||||||| ||  ||||||||||||||| ||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtgactttcttctttttctttcacaa 6539637  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 15928204 - 15928145
Alignment:
Q  41 tgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattttt 100  Q
    |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||||    
T  15928204 tgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattttt 15928145  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 44938933 - 44938863
Alignment:
Q  32 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttta 102  Q
    |||||||||||||||||| ||||| |||||  ||||||  ||||||||||| ||| ||||||  |||||||    
T  44938933 tgacattagtgacattgaacaaccacaatggtacaagtggctttcttctttctctttcacaaagtttttta 44938863  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 50754751 - 50754812
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| | |||| |||||||    
T  50754751 gtgacattggccaaccacaatgtcacatgtggctttcttctttttcttttacaagatttttt 50754812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 32008397 - 32008317
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctca 90  Q
    |||||||||||||   ||||| |||||||||||| |||||||||||  ||||| |||||| |||||||||||| |||||||    
T  32008397 acttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtctttcttctttctctctca 32008317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 31846952 - 31846861
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||   ||||| ||||||| |||| |||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 31846861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 53937919 - 53937988
Alignment:
Q  32 tgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||| | | ||| | ||||||||||||    
T  53937919 tgacattagtgatattgaccaaccacaatgtcacaagtaactttcttatgtctcttttacaatatttttt 53937988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 6607526 - 6607465
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||||||||||  ||||||||| ||  ||||||||||||||| |||||| |||||||    
T  6607526 gtgacattgaccaaccataatgtcacatgtggctttcttctttttctttcacaagatttttt 6607465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 31012154 - 31012215
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||||| |||||||||| ||  |||| |||||||||| ||||||| ||||||    
T  31012154 gtgacattgaccaaccacaatgtcacatgtgacttttttctttttctttcacaatttttttt 31012215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 32224311 - 32224372
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||| ||||  |||||||||||||||||||||||||| | | | ||||||||||||    
T  32224311 gtgacattgatcaactacaatgtcacaagtatctttcttctttctttttgacaatatttttt 32224372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 54223580 - 54223622
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttcttt 82  Q
    |||||||||||||||| ||||||||||| | ||||||||||||    
T  54223580 gtgacattgaccaaccacaatgtcacaaatgtctttcttcttt 54223622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 44023076 - 44023039
Alignment:
Q  32 tgacattagtgacattgaccaacctcaatgtcacaagt 69  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  44023076 tgacattagtgacattgaccaaccacaatgttacaagt 44023039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 9712983 - 9712943
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttct 80  Q
    |||||||||||||||| |||||||||||||  |||||||||    
T  9712983 gtgacattgaccaaccacaatgtcacaagtggctttcttct 9712943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 54613030 - 54613084
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtca 64  Q
    |||||||||||||   ||||| ||||||||||| |||||||||||| ||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgtca 54613084  T

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Target: scaffold0343 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12338 - 12281
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatt 97  Q
    |||||||||||||||| ||||||||||||| || ||||||||| ||| ||||||||||    
T  12338 gtgacattgaccaaccacaatgtcacaagtgtccttcttctttctctttcacaatatt 12281  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 42772096 - 42772035
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||||| ||||||||||||| |||||||||||| | | ||| ||||||||||    
T  42772096 gtgacattgaccaaccacaatgtcacaagtgtctttcttctttctttttcataatatttttt 42772035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 29385446 - 29385370
Alignment:
Q  13 acttgggtgacat---ggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 86  Q
    |||||||||||||   ||||| ||||||| ||||||||| |||||| |||||||||| ||  |||||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcacatgtggctttcttctttttct 29385370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 1839983 - 1840056
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatattt 98  Q
    |||||| |||||||  |||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| ||||    
T  1839983 tggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagattt 1840056  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 7137655 - 7137721
Alignment:
Q  27 gttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaa 93  Q
    |||| ||| ||| |||||||||||||||| |||||||||||||  |||||||| || ||| ||||||    
T  7137655 gttggtgaaattggtgacattgaccaaccacaatgtcacaagtgactttcttcattctctttcacaa 7137721  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 9177976 - 9177915
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||| |||| |||||| |||| ||||| ||  ||||||||||||||| ||||||||||||||    
T  9177976 gtgatattggccaaccacaatatcacatgtgactttcttctttttctttcacaatatttttt 9177915  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Complemental strand, 22894030 - 22893969
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||| | |||| |||||||    
T  22894030 gtgacattgaccaaccacaatgtcacaagtgactttcttctttttctttaacaagatttttt 22893969  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 29081611 - 29081668
Alignment:
Q  25 tggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttcttt 82  Q
    |||||| ||||||  |||||||||||||||| |||||||||||||| |||||||||||    
T  29081611 tggttggtgacatcggtgacattgaccaaccacaatgtcacaagtagctttcttcttt 29081668  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 31342034 - 31342095
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| |||||| |||||||||| ||| ||||||||||||||| |||||| |||||||    
T  31342034 gtgacattggccaaccacaatgtcacatgtagctttcttctttttctttcacaagatttttt 31342095  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 11512414 - 11512475
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  11512414 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 11512475  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 20286915 - 20286977
Alignment:
Q  24 atggttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttct 86  Q
    ||||||| |||||||  |||||||| |||||| |||||||||| ||  |||||||||||||||    
T  20286915 atggttggtgacattgatgacattggccaaccacaatgtcacatgtggctttcttctttttct 20286977  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 25786950 - 25787010
Alignment:
Q  41 tgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| ||| |  |||||||||||| |||||| ||||| ||| ||||||||||||||    
T  25786950 tgacattgatcaatcataatgtcacaagtgtctttcatctttctctttcacaatatttttt 25787010  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 25099369 - 25099321
Alignment:
Q  51 caacctcaatgtcacaagtatctttcttctttttctctcacaatatttt 99  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||    
T  25099369 caaccacaatgtcacaagtgtctttcttctttttctttcacaatatttt 25099321  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 17272726 - 17272787
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  17272726 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcacaagatttttt 17272787  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 7212027 - 7211968
Alignment:
Q  42 gacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||| |||||| |||||||||| ||  ||||||||||||||| |||||| |||||||    
T  7212027 gacattggccaaccacaatgtcacatgtgactttcttctttttctttcacaagatttttt 7211968  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 7211887 - 7211939
Alignment:
Q  40 gtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcaca 92  Q
    ||||||||| |||||| |||||||||| ||  ||||||||||||||| |||||    
T  7211887 gtgacattggccaaccacaatgtcacatgtggctttcttctttttctttcaca 7211939  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 29407607 - 29407563
Alignment:
Q  57 caatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||||| | |||||||||||| ||| ||||||||||||||    
T  29407607 caatgtcacaactgtctttcttctttctctttcacaatatttttt 29407563  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 507731 - 507804
Alignment:
Q  28 ttgatgacattagtgacattgaccaacctcaatgtcacaagtatctttcttctttttctctcacaatatttttt 101  Q
    ||||||||||| |||||||||||||| | |||| | ||||||   |||||||||| ||| |||||| |||||||    
T  507731 ttgatgacattggtgacattgaccaatcacaatattacaagtggatttcttctttctctttcacaagatttttt 507804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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