View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_low_25 (Length: 248)

Name: NF14194_low_25
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_low_25
NF14194_low_25
[»] chr2 (4 HSPs)
chr2 (14-238)||(34562718-34562942)
chr2 (14-218)||(34571512-34571713)
chr2 (14-218)||(34578980-34579181)
chr2 (14-218)||(34584729-34584930)
[»] chr8 (6 HSPs)
chr8 (14-224)||(41943799-41944006)
chr8 (43-218)||(25865561-25865733)
chr8 (103-203)||(38799371-38799471)
chr8 (103-203)||(38822046-38822146)
chr8 (126-207)||(44343873-44343956)
chr8 (127-206)||(43479850-43479929)
[»] chr1 (4 HSPs)
chr1 (103-182)||(7594411-7594490)
chr1 (14-80)||(7594197-7594263)
chr1 (103-172)||(18492714-18492784)
chr1 (103-171)||(18471104-18471173)
[»] chr5 (2 HSPs)
chr5 (103-206)||(12531365-12531468)
chr5 (103-206)||(12547151-12547254)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 34562718 - 34562942
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34562718 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatgactctggaatctgaaatccggcttgagatcaacatgagcaatttc 34562817  T
Q  114 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562818 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 34562917  T
Q  214 cgaggtctcttaagtccgccctttg 238  Q
    ||||||||||||||||| |||||||    
T  34562918 cgaggtctcttaagtcctccctttg 34562942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 34571512 - 34571713
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||| |||    |||||||||||    
T  34571512 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcc---tgagcaatttc 34571608  T
Q  114 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 213  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || ||||||||||| |||||||||||||||||   ||||||||||    
T  34571609 acgaacaagacgctggaatggaagtttacggatcaaaagttcggtactcttctgatacttacgtatctcacgaagagcaactgttccgcaacgaaaacga 34571708  T
Q  214 cgagg 218  Q
     ||||    
T  34571709 tgagg 34571713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 34578980 - 34579181
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttc 113  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||     |||||||||||    
T  34578980 caaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaattc---tgagcaatttc 34579076  T
Q  114 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 213  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||||||| |||||    
T  34579077 acgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacga 34579176  T
Q  214 cgagg 218  Q
     ||||    
T  34579177 tgagg 34579181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 218
Target Start/End: Original strand, 34584729 - 34584930
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttc 113  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||| | ||||| ||     |||||||||||    
T  34584729 caaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatctcaaatctgtcttgaaattc---tgagcaatttc 34584825  T
Q  114 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 213  Q
    |||||||||||||||||||||||| ||||| |||||||| |||| || |||||| || ||||||||||| |||||||||||||||||||||||| |||||    
T  34584826 acgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatacttacgtatctcacgaagagcaactgttccaggacgataacga 34584925  T
Q  214 cgagg 218  Q
     ||||    
T  34584926 tgagg 34584930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 41944006 - 41943799
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttc 113  Q
    ||||||| ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||| |||    |||||||||||    
T  41944006 caaacaatccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatct---tgagcaatttc 41943910  T
Q  114 acgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacga 213  Q
    |||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||| ||||| || ||||||||| | |||    
T  41943909 acgaacaagacgttggaatggaagcttacggatcaaaagatcagtactcttctggtatttacggatctcacgaagtgcaacggtaccaggacgatagcga 41943810  T
Q  214 cgaggtctctt 224  Q
     ||||| ||||    
T  41943809 tgaggtttctt 41943799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 25865733 - 25865561
Alignment:
Q  43 gcttcctgaagtgcgagaaccgcatggctctggaatctgaaatccggcttgagatcaacatgagcaatttcacgaacaagacgctggaatggaagcttac 142  Q
    |||||||||||||| ||||| ||||| ||||| ||||| | |||||  |||| |||    ||||||||||||||||||||||||||||||||||||||||    
T  25865733 gcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcc---tgagcaatttcacgaacaagacgctggaatggaagcttac 25865637  T
Q  143 ggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacgaaaacgacgagg 218  Q
    |||||||||| || | ||||||||| || ||||| ||||| ||||||||||| |||||||||||| ||||| ||||    
T  25865636 ggatcaaaagctcagtactcttctgatacttacggatctcacgaagagcaacggttccaggacgataacgatgagg 25865561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 38799471 - 38799371
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 202  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| | ||| || |  |||||||| || ||||| ||||| |  | |||||| |||||||    
T  38799471 tgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccag 38799372  T
Q  203 g 203  Q
    |    
T  38799371 g 38799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 38822046 - 38822146
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 202  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| | ||| || |  |||||||| || ||||| ||||| |  | |||||| |||||||    
T  38822046 tgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgctcttctgatacttacggatctctctcaaagcaacagttccag 38822145  T
Q  203 g 203  Q
    |    
T  38822146 g 38822146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 44343956 - 44343873
Alignment:
Q  126 ctggaatggaagcttacggatcaaaagatcggaactcttctggtatttac--gtatctcgcgaagagcaactgttccaggacga 207  Q
    |||||| |||||||||||||||||||| | || ||||||||| || ||||   | |||| ||||||||||| ||||||||||||    
T  44343956 ctggaagggaagcttacggatcaaaagtttggtactcttctgatacttacagatctctcacgaagagcaacggttccaggacga 44343873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 206
Target Start/End: Original strand, 43479850 - 43479929
Alignment:
Q  127 tggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccaggacg 206  Q
    |||||||||||||| | ||| | ||| |||| ||||||||| || || || ||||| ||||||||||| |||||||||||    
T  43479850 tggaatggaagcttcctgatgagaagctcggtactcttctgatacttgcggatctcacgaagagcaacagttccaggacg 43479929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 7594411 - 7594490
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctc 182  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||| || | |||||||||||| ||||| |||||    
T  7594411 tgagcaatttcacggacaagacgctgaaatggaagcttgcggatcaaaagctcagtactcttctggtacttacggatctc 7594490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 7594197 - 7594263
Alignment:
Q  14 caaacaaaccaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatct 80  Q
    ||||||| |||||||  || || || ||||||||||||||||| ||||| |||||||||||||||||    
T  7594197 caaacaatccaaccaggtaagcctcagctgcttcctgaagtgcaagaactgcatggctctggaatct 7594263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 18492784 - 18492714
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatc-ggaactcttctggtatt 172  Q
    |||| ||||||||||||||||| |||||||||||| |||||||| ||||  || || ||||||||||||||    
T  18492784 tgagaaatttcacgaacaagacactggaatggaagtttacggataaaaaattcaggtactcttctggtatt 18492714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 18471173 - 18471104
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatc-ggaactcttctggtat 171  Q
    |||| |||||||| |||||||| || ||||||||||||| |||||||||| || || |||||||||||||    
T  18471173 tgagaaatttcacaaacaagacactcgaatggaagcttatggatcaaaagttcaggtactcttctggtat 18471104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 12531468 - 12531365
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 202  Q
    ||||| |||||||||||||| | ||||||||||||||| |  || | ||| ||||  ||||||||||| || || ||||| ||||| ||||| ||||| |    
T  12531468 tgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctg 12531369  T
Q  203 gacg 206  Q
    ||||    
T  12531368 gacg 12531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 12547151 - 12547254
Alignment:
Q  103 tgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagatcggaactcttctggtatttacgtatctcgcgaagagcaactgttccag 202  Q
    ||||| |||||||||||||| | ||||||||||||||| |  || | ||| ||||  ||||||||||| || || ||||| ||||| ||||| ||||| |    
T  12547151 tgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcggtgctcttctggtacttgcggatctcacgaagtgcaacagttcctg 12547250  T
Q  203 gacg 206  Q
    ||||    
T  12547251 gacg 12547254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University