View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_low_26 (Length: 246)

Name: NF14194_low_26
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_low_26
NF14194_low_26
[»] scaffold0187 (1 HSPs)
scaffold0187 (1-227)||(2921-3154)
[»] chr2 (2 HSPs)
chr2 (162-227)||(8197578-8197643)
chr2 (162-227)||(8202338-8202403)
[»] chr1 (4 HSPs)
chr1 (161-217)||(52160290-52160346)
chr1 (162-207)||(40920586-40920631)
chr1 (162-226)||(7124321-7124385)
chr1 (160-224)||(35828602-35828666)
[»] chr4 (8 HSPs)
chr4 (138-225)||(32339719-32339802)
chr4 (162-227)||(38903755-38903820)
chr4 (161-226)||(29801558-29801623)
chr4 (162-227)||(47372831-47372896)
chr4 (162-227)||(48154884-48154949)
chr4 (162-206)||(6843795-6843839)
chr4 (162-226)||(7681948-7682012)
chr4 (163-227)||(7970418-7970482)
[»] chr6 (2 HSPs)
chr6 (162-227)||(6293429-6293494)
chr6 (162-227)||(32945428-32945493)
[»] chr3 (2 HSPs)
chr3 (162-218)||(55244458-55244514)
chr3 (162-206)||(42026594-42026638)
[»] chr8 (1 HSPs)
chr8 (162-207)||(23492214-23492259)
[»] scaffold0373 (1 HSPs)
scaffold0373 (162-206)||(2359-2403)
[»] chr5 (1 HSPs)
chr5 (162-198)||(28005715-28005751)


Alignment Details
Target: scaffold0187 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3154 - 2921
Alignment:
Q  1 atggaattggaaagatctcttattgaattttgtaaaacaagcatgaaagtnnnnnnnggaaggttaccgttggcaaatgaattataccttctatggcaag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||       | |||| ||||||||||||||||||||||||||||||||||||    
T  3154 atggaattggaaagatctcttattgaattttgtaaaataagcatgaaagtaaaaaaagaaaggctaccgttggcaaatgaattataccttctatggcaag 3055  T
Q  101 ttaacatataaactcttatttttgtt-aactttagctgctattaagaaat-----aactagagattaattaatgagtttgatagaaatatgatatacgat 194  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||    
T  3054 ttaacatataaactcttatttttttttaactttagctgctattaagaaattaaataactagagattaattaatgagtttgatagaaatatgatatacgat 2955  T
Q  195 agaaaattatggt-aacgtttgatctatgtagcc 227  Q
    ||||||||||||| ||||||||||||||||||||    
T  2954 agaaaattatggtaaacgtttgatctatgtagcc 2921  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 8197643 - 8197578
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||||   ||||||||| ||||||||    
T  8197643 attaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8197578  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 8202403 - 8202338
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| ||||||||||||||||| ||||||| |||||||   ||||||||| ||||||||    
T  8202403 attaatgagttggatagaaatatgatatatgatagaatattatggcgtcgtttgatccatgtagcc 8202338  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 52160346 - 52160290
Alignment:
Q  161 aattaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgat 217  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||||| || ||||||    
T  52160346 aattaacgagtttgatagaaatatgatatatgatagaatattatggtgacatttgat 52160290  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 40920631 - 40920586
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggt 207  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||||    
T  40920631 attaatgagttggatagaaatatggtatatgatagaatattatggt 40920586  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 7124321 - 7124385
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagc 226  Q
    |||||||| || |||||||||||| |||| ||||||  ||||||||  ||||||||| |||||||    
T  7124321 attaatgaattggatagaaatatggtataggatagagcattatggtgtcgtttgatccatgtagc 7124385  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 35828666 - 35828602
Alignment:
Q  160 taattaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgta 224  Q
    ||||||||||||| ||| |||||||| | |||||||||| ||||||| ||  ||||||| |||||    
T  35828666 taattaatgagttggatggaaatatggtttacgatagaacattatggcaatatttgatccatgta 35828602  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 32339719 - 32339802
Alignment:
Q  138 ctattaagaaataactagagattaattaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtag 225  Q
    ||||||||||||| |||||||||||     ||||| |||||| |||||||||| |||||||||||||||   ||||||||| ||||||    
T  32339719 ctattaagaaatacctagagattaac----gagttggatagagatatgatatatgatagaaaattatggcgtcgtttgatccatgtag 32339802  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 38903820 - 38903755
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    |||||||||||||||||| |||||||||| || | || ||||||| | ||||||||| ||||||||    
T  38903820 attaatgagtttgatagagatatgatatatgacataacattatggcatcgtttgatccatgtagcc 38903755  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 29801558 - 29801623
Alignment:
Q  161 aattaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagc 226  Q
    |||||||||| | ||| ||||||||||||| ||| |||||||||||   ||||||||| |||||||    
T  29801558 aattaatgagctggattgaaatatgatatatgattgaaaattatggcgtcgtttgatccatgtagc 29801623  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 47372831 - 47372896
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| |||||||||||| ||||  |||||| |||||||   ||||||||| ||||||||    
T  47372831 attaatgagttggatagaaatatggtatattatagaacattatggagtcgtttgatccatgtagcc 47372896  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 48154949 - 48154884
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| |||||||| |||||||| || |||| ||||||| |  ||||||| |||||||||    
T  48154949 attaatgagttggatagaaacatgatatatgacagaacattatggcattgtttgatgtatgtagcc 48154884  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 6843795 - 6843839
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatgg 206  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||    
T  6843795 attaatgagtttgatagaaatatgttatataatagaacattatgg 6843839  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 7682012 - 7681948
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagc 226  Q
    ||||||||||| |||||||||||| |||| ||||| | ||||| | | ||||||||| |||||||    
T  7682012 attaatgagttagatagaaatatggtatatgataggacattattgcatcgtttgatccatgtagc 7681948  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 7970482 - 7970418
Alignment:
Q  163 ttaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    |||||||||| |||||||||||  |||| |||| || ||||||||  ||||||||| ||||||||    
T  7970482 ttaatgagttagatagaaatatagtatatgataaaacattatggtgtcgtttgatccatgtagcc 7970418  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 6293494 - 6293429
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| |||||||||||| |||| ||||||  ||||||| |||||||| || ||||||||    
T  6293494 attaatgagttagatagaaatatggtatatgatagagcattatggcaacgtttggtcaatgtagcc 6293429  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 32945428 - 32945493
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatctatgtagcc 227  Q
    ||||||||||| |||||||||||  |||| ||||||| ||||||||  ||||||||| ||||||||    
T  32945428 attaatgagttagatagaaatattttatatgatagaacattatggtgtcgtttgatccatgtagcc 32945493  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 55244458 - 55244514
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggtaacgtttgatc 218  Q
    ||||||||||| |||||||||||| |||| ||||||| ||||||||  |||||||||    
T  55244458 attaatgagttggatagaaatatggtatatgatagaacattatggtgtcgtttgatc 55244514  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 42026638 - 42026594
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatgg 206  Q
    ||||||||||| |||||||||||| |||| ||||||| |||||||    
T  42026638 attaatgagttagatagaaatatggtatatgatagaacattatgg 42026594  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 23492214 - 23492259
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatggt 207  Q
    ||||||||||| ||||||||||||||||| ||||||| | ||||||    
T  23492214 attaatgagttggatagaaatatgatatatgatagaacactatggt 23492259  T

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Target: scaffold0373 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 2403 - 2359
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaaaattatgg 206  Q
    |||||||||||||||||||||||| ||||  |||||| |||||||    
T  2403 attaatgagtttgatagaaatatgttatataatagaacattatgg 2359  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 28005715 - 28005751
Alignment:
Q  162 attaatgagtttgatagaaatatgatatacgatagaa 198  Q
    |||||||||||||||||  ||||||||||||||||||    
T  28005715 attaatgagtttgatagggatatgatatacgatagaa 28005751  T

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