View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_28 (Length: 235)
Name: NF14194_low_28
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7552515 - 7552301
Alignment:
| Q |
1 |
tggataccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaagctggttttccaacaggatggtataatcttagttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7552515 |
tggataccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaagctggttttccaacaggatggtata------gttggt |
7552422 |
T |
|
| Q |
101 |
gtgttgagaagagaaaaagacaaatagaaatcagagacaattatgggaagcaacacgttgctttagctaaatacaaataaaataaaacaaagcatacgca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
7552421 |
ttgttgagaagagaaaaagacaaatagaaatcagagacaattatgggaagcaacacgttgcttttgctaaacacaaataaaataaaacaaagcatacgca |
7552322 |
T |
|
| Q |
201 |
atgacaaggaaagcatattat |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
7552321 |
atgacaaggaaagcatattat |
7552301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 37272160 - 37272217
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| |
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|
| T |
37272160 |
ccaacacgaggcaactcaaatgtcgcaattaggcgactaggggtggaccgcaataaag |
37272217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 6960100 - 6960142
Alignment:
| Q |
11 |
cacgaggcaactcaaatgtcgtaattaggcgactagtggcgga |
53 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
6960100 |
cacgaggcaactcaaatgtcgcaattaggcgactaggggcgga |
6960142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 43288253 - 43288196
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||| || |||||||||| |
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|
| T |
43288253 |
ccaacacgaggcaacacaaatgtcacaattaggcgactaggggcagatcgcaataaag |
43288196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 34248348 - 34248291
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||| |
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|
| T |
34248348 |
ccaacacaaggcaactcaaatgtcgcaattaggcgactaggggcggattgcaataaag |
34248291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 27402530 - 27402587
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
||||||||||||||||||||||||| || |||| |||||| |||||| |||| ||||| |
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|
| T |
27402530 |
ccaacacgaggcaactcaaatgtcgcaagtaggtgactaggggcggatcgcactaaag |
27402587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 27402243 - 27402280
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgact |
44 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |
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|
| T |
27402243 |
ccaacacgaggcaactcaaatgttgcaattaggcgact |
27402280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 29432401 - 29432363
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgacta |
45 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
29432401 |
ccaacacgaggcaactcaaatgtcgcaattaggcgacta |
29432363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 38663236 - 38663182
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaata |
61 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| | ||| || ||||||| |
|
|
| T |
38663236 |
ccaacacgaggcaactcaaatgtcgcaattaggcgactgggggcagatcgcaata |
38663182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 1548507 - 1548450
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| | | |||||| | |||||||| |
|
|
| T |
1548507 |
ccaacaagaggcaactcaaatgtcgcaattaggcgatttggggcggatcacaataaag |
1548450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 30588030 - 30587974
Alignment:
| Q |
8 |
caacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
||||| |||| ||||||||||||| |||| ||||||||| || ||| |||||||||| |
|
|
| T |
30588030 |
caacatgaggaaactcaaatgtcgcaattgggcgactaggggtggatcgcaataaag |
30587974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 33385250 - 33385193
Alignment:
| Q |
7 |
ccaacacgaggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaataaag |
64 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
33385250 |
ccaacacaaagcaactcaaatgtcgcaattaggtgactagggatggaccgcaataaag |
33385193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 662682 - 662637
Alignment:
| Q |
15 |
aggcaactcaaatgtcgtaattaggcgactagtggcggaccgcaat |
60 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||||||||||||| |
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|
| T |
662682 |
aggcaacccaaatggcgcaattaggcgactaggggcggaccgcaat |
662637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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