View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_29 (Length: 234)
Name: NF14194_low_29
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 47616547 - 47616755
Alignment:
| Q |
17 |
aagtaatatctgaatcttcttcaagatgggacccatctttggtttcaaccaataagaattgagtttctaatggaacttggcttcctttatctcccattct |
116 |
Q |
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| T |
47616547 |
aagtaatatctgaatcttcttcaagatgggacccatctttggtttcaaccaataagaattgagtttctaatggaacttggcttcctttatctcccattct |
47616646 |
T |
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| Q |
117 |
ttgtgccatccaccatagcttgaaacggaaacatgccatgaatctaacatctgttaattttcc-gagtgaaactatgtgtctgctatctgaattatccat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47616647 |
ttgtgccatccaccatagcttgaaacggaaacatgccatgaatctaacatctgttaattttccagagtgaaactatgtgtctgctatctgaattatccat |
47616746 |
T |
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| Q |
216 |
ctctgctcc |
224 |
Q |
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|||||||| |
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| T |
47616747 |
ttctgctcc |
47616755 |
T |
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