View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14194_low_3 (Length: 604)

Name: NF14194_low_3
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14194_low_3
NF14194_low_3
[»] chr7 (4 HSPs)
chr7 (10-582)||(30408228-30408803)
chr7 (19-582)||(30394611-30395160)
chr7 (496-546)||(23747323-23747374)
chr7 (492-553)||(1110411-1110473)
[»] chr3 (2 HSPs)
chr3 (367-436)||(2057042-2057111)
chr3 (348-431)||(22295006-22295089)
[»] chr4 (3 HSPs)
chr4 (488-580)||(13298521-13298614)
chr4 (494-553)||(55314494-55314554)
chr4 (496-543)||(9318706-9318754)
[»] chr6 (2 HSPs)
chr6 (489-553)||(2732929-2732994)
chr6 (489-518)||(9997224-9997253)
[»] chr1 (2 HSPs)
chr1 (496-548)||(11766186-11766237)
chr1 (496-564)||(6025962-6026031)
[»] chr5 (4 HSPs)
chr5 (490-553)||(19115101-19115164)
chr5 (488-553)||(11257720-11257786)
chr5 (367-413)||(18875594-18875640)
chr5 (495-546)||(41015013-41015065)
[»] chr8 (4 HSPs)
chr8 (496-553)||(8282852-8282910)
chr8 (496-553)||(13851011-13851067)
chr8 (508-552)||(13869848-13869891)
chr8 (493-536)||(18737689-18737733)
[»] chr2 (2 HSPs)
chr2 (497-538)||(41631902-41631944)
chr2 (490-553)||(16733713-16733777)
[»] scaffold0491 (1 HSPs)
scaffold0491 (493-536)||(4388-4432)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 10 - 582
Target Start/End: Complemental strand, 30408803 - 30408228
Alignment:
Q  10 cagaacctgtgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagatgg 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408803 cagatcctatgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagatgg 30408704  T
Q  110 agccactcaagcagtcctatcacctgaaaacaatcctgaagatgccgactcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgctg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408703 agccactcaagcagtcctatcacctgaaaacaatcctgaagatgccgattcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgctg 30408604  T
Q  210 gcattggcaatacaaatagaga--cagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcctc 307  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408603 gcattggcaatacaaatagagagacagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcctc 30408504  T
Q  308 cgagggctgttcgtgagccacgagtggtagtccaaattgagagtgagatcgacatacttgatgatggttatcgctggcgaaagtatggacagaaggttgt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408503 cgagggctgttcgtgagccacgagtggtagtccaaattgagagtgacatcgacatacttgatgatggttatcgctggcgaaagtatggacagaaggttgt 30408404  T
Q  408 caaagggaatccaaacccaaggtagtcatactgctttttctttatgcatctgcaggtctgtttag-aggaaatactgtcaatgtagcgaaatttgaacaa 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  30408403 caaagggaatccaaacccaaggtagtcatactgctttttctttatgcatctgcaggcctgtttagaaggaaatactgttaatgtagcgaaatttgaacaa 30408304  T
Q  507 attgctattgtttgtgatatgctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactgct 582  Q
     | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408303 gtggctattgtttgtgatattctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactgct 30408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 582
Target Start/End: Complemental strand, 30395160 - 30394611
Alignment:
Q  19 tgaagagagctagatctcaaggtatgtttgaatcggacaacgctccggagcattcttcagcacttggtaatcatgatggtgataaagatggagccactca 118  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||     
T  30395160 tgaagagagctagatctcaaggtatgtttgaatcagacgacgctcaggagcattcttccgcacttgataatcatgatggtgataaagatggagccactc- 30395062  T
Q  119 agcagtcctatcacctgaaaacaatcctgaagatgccgactcagaatcgaaaagaaggtactgtactttatctgctactgtcttcatgctggcattggca 218  Q
                  ||||||||||| | ||   ||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| | |||||||||    
T  30395061 --------------ctgaaaacaattccga---tgccgactcagaatcgaaaagaaggtattgtattttatctgatactgtcttcatgttagcattggca 30394979  T
Q  219 atacaaataga--gacagtctatgtatgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatggtgcctccgagggctg 316  Q
    |||||||||||  |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  30394978 atacaaatagaaagacaatctatatacgttgttggtttaattttctgttgcaggaagaaggagagctacccggttgaaacaatgctgcctcggagggctg 30394879  T
Q  317 ttcgtgagccacgagtggtagtccaaattgagagtgagatcgacatacttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaa 416  Q
    |||||| |||||||||| ||||||||| ||||||||| || ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394878 ttcgtgcgccacgagtgatagtccaaagtgagagtgacattgatgtacttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaa 30394779  T
Q  417 tccaaacccaaggtagtcatactgctttttctttatgcatctgcaggtctgtttagaggaaatactgtcaatgtagcgaaatttgaacaaattgctattg 516  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30394778 tccaaacccaaggtagtcatattgctttttctttatgcatctgcagatctgtttagaggaaatactgtcaatgtagtgaaatttgaacaaattgctattg 30394679  T
Q  517 tttgtgatatg--ctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactgct 582  Q
    ||||||| | |   ||||||||||||||||||||||||| |||| ||| | || ||||||||||||||    
T  30394678 tttgtgagaagatataattagtacaaaatgttttcaaatagtgtgtatcgcggtattatagcactgct 30394611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 23747323 - 23747374
Alignment:
Q  496 aatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgtt 546  Q
    ||||||||||||| ||||||||| |||||||||||| |||||||||| ||||    
T  23747323 aatttgaacaaatagctattgttctgtgatatgctagttagtacaaactgtt 23747374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 553
Target Start/End: Complemental strand, 1110473 - 1110411
Alignment:
Q  492 gcgaaatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaat 553  Q
    |||||||||||||||||||||||||||| | ||||||||| ||||| | || |||| ||||||    
T  1110473 gcgaaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaat 1110411  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 367 - 436
Target Start/End: Original strand, 2057042 - 2057111
Alignment:
Q  367 gatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggtagtcat 436  Q
    |||||||||||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||||    
T  2057042 gatgatggttatcggtggcggaaatatggacagaaagttgtcaaaggaaatcccaacccaaggtagtcat 2057111  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 431
Target Start/End: Original strand, 22295006 - 22295089
Alignment:
Q  348 gagtgagatcgacatacttgatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagggaatccaaacccaaggta 431  Q
    ||||||| | |||||| | |||||||||||||||||||| || ||||| |||||||| || | ||| ||||| ||||| |||||    
T  22295006 gagtgaggttgacatattggatgatggttatcgctggcgtaaatatgggcagaaggtggtaagaggcaatcctaaccctaggta 22295089  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 488 - 580
Target Start/End: Original strand, 13298521 - 13298614
Alignment:
Q  488 tgtagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaattgtgtctatagtggcattatagcactg 580  Q
    ||||||| |||||||||||||  |||||||| |||||||||||| |||||||||| || | |||||| ||| ||||| ||||| ||||||||||    
T  13298521 tgtagcggaatttgaacaaatcactattgttctgtgatatgctatttagtacaaagtgctgtcaaatagtgactataatggcactatagcactg 13298614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 494 - 553
Target Start/End: Original strand, 55314494 - 55314554
Alignment:
Q  494 gaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| |||| ||||||    
T  55314494 gaaatttgaacaaattgctattgttctgcgatatgctaattagtacaaagtgttatcaaat 55314554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 543
Target Start/End: Original strand, 9318706 - 9318754
Alignment:
Q  496 aatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaat 543  Q
    ||||||||||||||  |||||||| ||||||||||| ||||||||||||    
T  9318706 aatttgaacaaattcatattgtttagtgatatgctatttagtacaaaat 9318754  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 489 - 553
Target Start/End: Original strand, 2732929 - 2732994
Alignment:
Q  489 gtagcgaaatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaat 553  Q
    |||| ||||||||||||||| |||||||||| | ||||||||| ||||||||||||||| ||||||    
T  2732929 gtagtgaaatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaatgttgtcaaat 2732994  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 518
Target Start/End: Complemental strand, 9997253 - 9997224
Alignment:
Q  489 gtagcgaaatttgaacaaattgctattgtt 518  Q
    ||||||||||||||||||||||||||||||    
T  9997253 gtagcgaaatttgaacaaattgctattgtt 9997224  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 548
Target Start/End: Complemental strand, 11766237 - 11766186
Alignment:
Q  496 aatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgtttt 548  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||| ||||||    
T  11766237 aatttgaacaaatagctattgttt-tgatatgctatttagtacaaagtgtttt 11766186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 564
Target Start/End: Complemental strand, 6026031 - 6025962
Alignment:
Q  496 aatttgaacaaattgctattgttt-gtgatatgctaattagtacaaaatgttttcaaattgtgtctatag 564  Q
    ||||||||||||| | |||||||  | ||||||||| ||||||||||||||| |||||| ||| ||||||    
T  6026031 aatttgaacaaatagttattgttccgcgatatgctatttagtacaaaatgttgtcaaatagtggctatag 6025962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 553
Target Start/End: Complemental strand, 19115164 - 19115101
Alignment:
Q  490 tagcgaaatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    |||||||||||||||| |||||| |||||||  ||||| || ||||||||||| ||| ||||||    
T  19115164 tagcgaaatttgaacagattgctgttgtttgcaatatgatatttagtacaaaacgttgtcaaat 19115101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 553
Target Start/End: Original strand, 11257720 - 11257786
Alignment:
Q  488 tgtagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    ||||||| ||| ||||||||| ||||||||| |  ||||||||| ||||||||||||||| ||||||    
T  11257720 tgtagcggaatatgaacaaatcgctattgttatacgatatgctatttagtacaaaatgttgtcaaat 11257786  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 367 - 413
Target Start/End: Complemental strand, 18875640 - 18875594
Alignment:
Q  367 gatgatggttatcgctggcgaaagtatggacagaaggttgtcaaagg 413  Q
    |||||||||||| | |||||||| ||||||||||| |||||||||||    
T  18875640 gatgatggttatagatggcgaaaatatggacagaaagttgtcaaagg 18875594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 546
Target Start/End: Complemental strand, 41015065 - 41015013
Alignment:
Q  495 aaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgtt 546  Q
    ||||||||||||| ||||||||||  ||||||||||| |||||||||| ||||    
T  41015065 aaatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgtt 41015013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 553
Target Start/End: Complemental strand, 8282910 - 8282852
Alignment:
Q  496 aatttgaacaaattgctattgt-ttgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    ||||||||||||| |||||||| ||||||||||| | ||| ||||||||||| ||||||    
T  8282910 aatttgaacaaatagctattgtcttgtgatatgcgatttattacaaaatgttctcaaat 8282852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 553
Target Start/End: Complemental strand, 13851067 - 13851011
Alignment:
Q  496 aatttgaacaaattgctattgtttgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    ||||||| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||||    
T  13851067 aatttgagcaagttgctatt-tttgtgatatactatttagtacaaaatgttatcaaat 13851011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 552
Target Start/End: Complemental strand, 13869891 - 13869848
Alignment:
Q  508 ttgctattgtttgtgatatgctaattagtacaaaatgttttcaaa 552  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||    
T  13869891 ttgctatt-tttgtgatatgctatttagtacaaaatgttgtcaaa 13869848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 18737689 - 18737733
Alignment:
Q  493 cgaaatttgaacaaattgctattgttt-gtgatatgctaattagt 536  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  18737689 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 18737733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 538
Target Start/End: Complemental strand, 41631944 - 41631902
Alignment:
Q  497 atttgaacaaattgctattg-tttgtgatatgctaattagtac 538  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  41631944 atttgaacaaattgctattgttttgtgatatgctatttagtac 41631902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 553
Target Start/End: Complemental strand, 16733777 - 16733713
Alignment:
Q  490 tagcgaaatttgaacaaattgctattgtt-tgtgatatgctaattagtacaaaatgttttcaaat 553  Q
    |||||||||||||| |||||||||||||| || |||  |||| |||||||| | |||||||||||    
T  16733777 tagcgaaatttgaataaattgctattgttctgcgattcgctatttagtacacagtgttttcaaat 16733713  T

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Target: scaffold0491 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 4388 - 4432
Alignment:
Q  493 cgaaatttgaacaaattgctattgttt-gtgatatgctaattagt 536  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  4388 cgaaatttgaacaaattgctattgtttcgggatatgctatttagt 4432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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