View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_4 (Length: 602)
Name: NF14194_low_4
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 43019151 - 43019734
Alignment:
| Q |
1 |
ccaacacagcatatttattagtttccaccagnnnnnnnntattcactagcctaatactctacctctggtatgattgtgctaaataatgatctcaaataaa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019151 |
ccaacacagcatatttattagtttccaccagaaaaata-tattcactagcctaatactctacctctggtatgattgtgctaaataatgatctcaaataaa |
43019249 |
T |
|
| Q |
101 |
tgatatgataaattaatctaaaggattttaatcgttgtttacgtggttcaccgacaaaggacttattaaatacctcaccatatatagaattcaccatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019250 |
tgatatgataaattaatctaaaggattttaatcgttgtttacgtggttcaccgacaaaggacttattaaatacctcaccatatatagaattcaccatttt |
43019349 |
T |
|
| Q |
201 |
aaaactattatctnnnnnnnnnnnnnnnnnnngttttgtaccgagtctgaactctaaactactaatttaagctagacttagaagttttatttttaaaaat |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019350 |
aaaactattatctaaaaaaataaaaaaataa-gttttgtaccgagtctgaactctaaactactaatttaagctagacttagaagttttatttttaaaaat |
43019448 |
T |
|
| Q |
301 |
ttctcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataaaatatgaaggagtgaaggacagaaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43019449 |
ttctcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataaaatatgaaggagtgaaggacagaaat |
43019548 |
T |
|
| Q |
401 |
agaaaaaggaagagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatgtcgattgtacttnnnnnnnnnnnnnn |
500 |
Q |
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| T |
43019549 |
agaaaaaggaagagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatgtcgattgtacttaaaaaaaagaaaaa |
43019648 |
T |
|
| Q |
501 |
caaattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagttgttgttcttcg |
586 |
Q |
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| T |
43019649 |
caaattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagttgttgttcttcg |
43019734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 304 - 581
Target Start/End: Original strand, 35058098 - 35058372
Alignment:
| Q |
304 |
tcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataaaatatgaaggagtgaaggacagaaataga |
403 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
35058098 |
tcttcaaattttagataggttgattgaataatgcatataatttatatattcttgtaaaatttaaatcataaattatgaaggactgatggacagaaataga |
35058197 |
T |
|
| Q |
404 |
aaaaggaagagacgaatttgaatttaaaaaagtaaac-tttcattgaattgaagaaacgtaaaattacaatgtcgattgtacttnnnnnnnnnnnnnnca |
502 |
Q |
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|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||| || |
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| T |
35058198 |
aaaaggaagagacgaatttgaattaaaaaaagttaacttttcattgaattgaagaaacataaaattacaatgtcgattgaact----ccaaaaaaaaaca |
35058293 |
T |
|
| Q |
503 |
aattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagttgttgtt |
581 |
Q |
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| T |
35058294 |
aattacattggcaaaataattgaaatatgccatcaaataaaatttccctaaaaatccttccaacggtaaagttgttgtt |
35058372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 391 - 483
Target Start/End: Original strand, 42807576 - 42807670
Alignment:
| Q |
391 |
ggacagaaatagaaaaaggaa---gagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatgtcgattgta |
483 |
Q |
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| T |
42807576 |
ggacagaagtagaaaaaggaataggagacgaatttgaatt-aaaaaagtagactttcattgaattgaacaaacataaaattacaatgtcgattgta |
42807670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 545
Target Start/End: Original strand, 42807682 - 42807726
Alignment:
| Q |
501 |
caaattacagtggcaaaataattgaaatatgccatcaaatcaaat |
545 |
Q |
| |
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||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
42807682 |
caaattacattggcaaaataattgaattatgccatcaaatcaaat |
42807726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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